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GT22740

CSHL Arabidopsis genetrap mutant lines

Original: GT22740

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22740

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10329037 [Map]; Strand: c
      • AT5G28360.1 - [+] show detail - ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE); 1-aminocyc...
        Distance: 0; Region: exon3 (NonCoding)
    Flanking Genome Sequence: GT22740 - 5-prime edge 
    TCTCTCTCGA CACTATAATT TGCTTTCAAT AATGTTTTGT TTGGGGACGG 
    AAAATAAACA GGCGATTGCG ACGTTTATGG AGAGAGCGAG AGGCGGGCGG 
    GTGAGGTTTG AGGCGGAGAG GGTGGTGATG AGCGGAGGAG CCACCGGAGC 
    AAATGAGACG ATCATGTTCT GTCTTGCTGA TCCCGGCGAC GCTTTTCTCG 
    TCCCTACTCC TTATTATGCT GCGTACGTAT ATATACACAC TTTACTAGTA 
    TTCAAATAAA TATTATTTTG GTCATTAATA ATTAAAAAGA CACATTAATT 
    AGGGATTTTG ATGTTATGAA ATAGAATAAG TAAACATTAT ACTATATTAA 
    AATAAAAGTA ATCGAAAAGG GCAAAAGTTC TAATGATTTC ATAATTACAT 
    AGGTCAAAAA ACAAAAGACT CTTTTGATAA TGGGTTTTCA CTTTTCAGAA 
    TTATTTGTGA AATATACCTC ATTTGATTGA TTCAATATTT TAATTTGGTA 
    AGCAACCCCG TCCACACAAG TTACAACTAT GATCAAATTG TCGATTGACT 
    CTTCACAAAA GTCAAACCAT TAATTAACAC TTGCTTGACT TGCTCTCTTC 
    AGTACTAATT ATACTGGGTT TACTAAAAAT TCCAGATTCG ATAGAGACTT 
    AAGGTGGAGA ACTGGAGTTA GAATAATCCC TGTGGAGTGT AGCAGCTCAA 
    ACAATTTCCA GGTTACAAAA CAAGCCCTAG AATCAGCGTA CCTTAAGGCC 
    CAAGAAACCG GTATCAAGAT CAAAGGCCTG ATCATCTCAA ACCCATCAAA 
    CCCTCTTGGA ACATCTCTCG ATCGAGAAAC TCTTGAAAGC CTTGTCAGCT 
    T

AT5G28360.1

Model type
Pseudogene
Short Description
ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE); 1-aminocyclopropane-1-carboxylate synthase/ catalytic/ pyridoxal phosphate binding / transferase, transferring nitrogenous groups
Curator Summary
a pseudogene belonging to the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. Transcript has not been detected.
Computational Description
1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE (ACS3); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, catalytic activity; INVOLVED IN: biosynthetic process; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424), Aminotransferase, class I and II (InterPro:IPR004839), 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: ACS1 (ACC SYNTHASE 1); 1-aminocyclopropane-1-carboxylate synthase (TAIR:AT3G61510.1); Has 826 Blast hits to 826 proteins in 226 species: Archae - 2; Bacteria - 146; Metazoa - 60; Fungi - 54; Plants - 536; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Link
InterPro Scan - TAIR