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GT22805

CSHL Arabidopsis genetrap mutant lines

Original: GT22805

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22805

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19595470 [Map]; Strand: w
      • AT2G47840.1 - [+] show detail - Uncharacterised conserved protein ycf60
        Distance: -469; Region: promoter
      • AT2G47850.3 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: -170; Region: promoter
      • AT2G47850.1 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: -203; Region: promoter
      • AT2G47850.2 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: -203; Region: promoter
    Flanking Genome Sequence: GT22805 - 5-prime edge 
    CCCCGCCCAA GGACCTTACC GTCATGTTTG GTTGGAAACT AGTAAAAATT 
    AGTTTATTTA TTTTTTGTTT GTTGTTTTGT CAAGTAGTAT ATTTCTTGGA 
    AATATCTTCC CTTTTCTGGG ATGCTTTTAC TTGGCGACCC AAGGACCAAG 
    AGAGAACCAA AAATAAATCT CACAAAACAA ATTAATACAA ACTACTACTA 
    TATACTATTA TTATTTAAAA AAGTATATGA GAAAAAGAAA TTGAAAGCTA 
    AAAAAAGAAA CAGTAGTGCA GAGGGCAGAC CGTACGGTAT TCCTGAAGAG 
    CGAAAGAAGA GAGAGAGAGA GAGACCGACC AAAGAAGAAG CTCCTCTCAA 
    TCACTGTCGA AGCATCTCTT CTTCTTCTTC TTCTTTTTTT CTTCTCACTC 
    G

AT2G47840.1

Model type
Protein coding
Short Description
Uncharacterised conserved protein ycf60
Computational Description
Uncharacterised conserved protein ycf60; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55710.1); Has 358 Blast hits to 358 proteins in 92 species: Archae - 0; Bacteria - 125; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47850.1

Model type
Protein coding
Short Description
Zinc finger C-x8-C-x5-C-x3-H type family protein
Computational Description
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G18550.1); Has 1724 Blast hits to 1003 proteins in 159 species: Archae - 0; Bacteria - 7; Metazoa - 368; Fungi - 218; Plants - 971; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47850.2

Model type
Protein coding
Short Description
Zinc finger C-x8-C-x5-C-x3-H type family protein
Computational Description
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G18550.1); Has 1403 Blast hits to 803 proteins in 136 species: Archae - 0; Bacteria - 13; Metazoa - 242; Fungi - 122; Plants - 888; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47850.3

Model type
Protein coding
Short Description
Zinc finger C-x8-C-x5-C-x3-H type family protein
Computational Description
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G18550.1); Has 1724 Blast hits to 1003 proteins in 159 species: Archae - 0; Bacteria - 7; Metazoa - 368; Fungi - 218; Plants - 971; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).
Link
InterPro Scan - TAIR