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GT22926

CSHL Arabidopsis genetrap mutant lines

Original: GT22926

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22926

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23185758 [Map]; Strand: w
    Flanking Genome Sequence: GT22926 - 5-prime edge
    GGATCCCCAA AACGCCACGT GTCGTCTTCC ATGCCAGTAA TACGATTCTG 
    CCCGCTGCGT CATATTACCG GATCTTCAGA ATCCGAATTA TTATGCCCAC
    CCGCTTCCCC CATTTACCGG GTCGGATTCA GTCACTATCC AATTATGTGA
    TCAAATAATC CATAGCCTTT TCAACGAAGC CCGATTATTC GACCCGTTAT
    CTGCGGGTAG ATCCGAACTA GAATCTTCAA ATTCCCTGGG AATCTCCACA
    ATGATACCGA CTAAATCAAT CGGTTCTCTC TCACAAGCTT CCATCGGAAA
    CCTCACCGGC GAGCCAGAGG AGGAAGACGG CGTCGAGGAT TCGGATTCGT
    CCGATGAAGA GGAACTTCCG GCTTCGGTAT CCTCAATTGG TTTAACCGAT
    GGAAACACAG CAGTAACCGG TTCGGGTTCG GTAACCGGCT GTGCGGGTTG
    AACCGGAGCT CTACAAAGAG GACAACTTGA TCTGGACCGG AACCACGTGT
    CTATACAATC GACATGGAAC ACGTGGCCGC ATTTGGGAAG GACACGTCCT
    TCGTCGTCTT CT

AT3G62690.1

Model type
Protein coding
Short Description
AtL5
Curator Summary
Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end.
Computational Description
AtL5 (ATL5); FUNCTIONS IN: zinc ion binding; INVOLVED IN: protein complex assembly; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G47560.1); Has 10661 Blast hits to 10636 proteins in 314 species: Archae - 0; Bacteria - 0; Metazoa - 2642; Fungi - 1094; Plants - 5229; Viruses - 125; Other Eukaryotes - 1571 (source: NCBI BLink).
Link
InterPro Scan - TAIR