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GT22953

CSHL Arabidopsis genetrap mutant lines

Original: GT22953

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22953

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 17046714 [Map]; Strand: c
      • AT5G42591.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 9934; Region: intergenic
      • AT5G42600.1 - [+] show detail - marneral synthase
        Distance: -6803; Region: intergenic
    Flanking Genome Sequence: GT22953 - 5-prime edge 
    CTAACTTTTT ATCGACAAAA AGACTCAACA CTCTATTTTA AAATGACTCT 
    TAATAACTGT TAATATTTTT GACAAAAAAA AAATACCGGT TAAAATTATA 
    ACTTACCTTT GGGTTCATTT TTTGTTGCAA AAACCTTTAA ATATTTCAAA 
    AATTTTATCA TTGGTTTTTA AAATTTTGGA ACTT

AT5G42591.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G42600.1

Model type
Protein coding
Short Description
marneral synthase
Curator Summary
Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral.
Computational Description
marneral synthase (MRN1); CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases family protein (TAIR:AT1G78500.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR