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GT22962

CSHL Arabidopsis genetrap mutant lines

Original: GT22962

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22962

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 901061 [Map]; Strand: c
      • AT4G02050.1 - [+] show detail - sugar transporter protein 7
        Distance: -191; Region: promoter
      • AT4G02060.2 - [+] show detail - Minichromosome maintenance (MCM2/3/5) family protein
        Distance: 0; Region: intron2 (5UTR)
      • AT4G02055.1 - [+] show detail - pre-tRNA
        Distance: -115; Region: promoter
      • AT4G02060.1 - [+] show detail - Minichromosome maintenance (MCM2/3/5) family protein
        Distance: -327; Region: promoter
    Flanking Genome Sequence: GT22962 - 5-prime edge 
    GTTTATGATA TGTCATCTGT TTCCAAAAAT GGGTGACAAT TGTGGGATAC 
    AATAATGTCA TCTTCATCAT CCTCCTTACG TTGAAAACTA CTATGTGTGT 
    GATTTCTTCT TACACTTGTC TTAAATCCAT AGCTACTATC GAAATTTGTG 
    TGTGTGAATT TAAAGCTTTT GATTTATTTT ATTTTTGTTG TTGTTGTATA 
    TTTAGTCTCT CTATATTCGA CTTTGATCAA AACTTGGTCA ACATCATCTT 
    TAACATCGCC TTCATAGTAG GCGATCAAAA AATCCATGGA ATAAATAGCA 
    CACACAAGTC TGAATCATTT CCCAGTCTAC AACAAATCGT TACATCTTCC 
    TTCATCTCTC TCGA

AT4G02050.1

Model type
Protein coding
Short Description
sugar transporter protein 7
Computational Description
sugar transporter protein 7 (STP7); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G26340.1); Has 26348 Blast hits to 25870 proteins in 1897 species: Archae - 376; Bacteria - 11847; Metazoa - 3711; Fungi - 6732; Plants - 2516; Viruses - 0; Other Eukaryotes - 1166 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02055.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-His (anticodon: GTG)
Link
InterPro Scan - TAIR

AT4G02060.1

Model type
Protein coding
Short Description
Minichromosome maintenance (MCM2/3/5) family protein
Curator Summary
Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.
Computational Description
PROLIFERA (PRL); FUNCTIONS IN: protein binding, DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: sugar mediated signaling pathway, cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 7 (InterPro:IPR008050); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT5G44635.1); Has 4609 Blast hits to 4442 proteins in 796 species: Archae - 407; Bacteria - 660; Metazoa - 1239; Fungi - 945; Plants - 433; Viruses - 2; Other Eukaryotes - 923 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02060.2

Model type
Protein coding
Short Description
Minichromosome maintenance (MCM2/3/5) family protein
Curator Summary
Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.
Computational Description
PROLIFERA (PRL); CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 7 (InterPro:IPR008050); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT5G44635.1).
Link
InterPro Scan - TAIR