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GT22968

CSHL Arabidopsis genetrap mutant lines

Original: GT22968

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22968

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23328595 [Map]; Strand: c
      • AT3G63140.1 - [+] show detail - chloroplast stem-loop binding protein of 41 kDa
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT22968 - 5-prime edge 
    ACCACCACAA GTCAGAACAG AGTGAGGTAA TCATTACCAA CAAAAAATGG 
    CGGCTTTATC ATCCTCCTCT CTGTTTTTCT CTTCCAAGAC AACTTCTCCG 
    ATCAGCAATC TCCTGATCCC GCCATCTCTC CACCGCTTCT CTCTACCCTC 
    TTCATCTTCC TCCTTTTCCT CTCTCTCTTC TTCTTCTTCT TCTTCTTCTT 
    CATCTCACTC GA

AT3G63140.1

Model type
Protein coding
Short Description
chloroplast stem-loop binding protein of 41 kDa
Curator Summary
Encodes a protein with ribonuclease activity that is involved in plastid rRNA maturation.
Computational Description
chloroplast stem-loop binding protein of 41 kDa (CSP41A); FUNCTIONS IN: mRNA binding, poly(U) RNA binding; INVOLVED IN: rRNA processing; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: chloroplast RNA binding (TAIR:AT1G09340.1); Has 1047 Blast hits to 1047 proteins in 372 species: Archae - 70; Bacteria - 649; Metazoa - 6; Fungi - 5; Plants - 106; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).
Link
InterPro Scan - TAIR