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GT22974

CSHL Arabidopsis genetrap mutant lines

Original: GT22974

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22974

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2327842 [Map]; Strand: c
      • AT3G07300.1 - [+] show detail - NagB/RpiA/CoA transferase-like superfamily protein
        Distance: -228; Region: promoter
      • AT3G07300.2 - [+] show detail - NagB/RpiA/CoA transferase-like superfamily protein
        Distance: -218; Region: promoter
      • AT3G07300.3 - [+] show detail - NagB/RpiA/CoA transferase-like superfamily protein
        Distance: -217; Region: promoter
      • AT3G07310.1 - [+] show detail - Protein of unknown function (DUF760)
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT22974 - 5-prime edge 
    TGGTGTGGTT ATAAGGAATA AGAGATACTG TAGTTGGGTT CAATTTTATG 
    TTATGTGTTA AGTTTCCTTG TTCAATTTGA TCTTTCTCCT TTTGTCAAAA 
    GACTCAAAAC CTCAAAAACA AAACTAAAAT TTGGGTCCCA AAGAAGCTAT 
    GCAAAGGGAA GGAGATACTT TGATAATGCT TTTATTTTTG GGCTTATTTT 
    AGGCCCAAAT AGCACCTTAT TTCGGCCCAA AAGTTAGACC TACCAAAAAA 
    CCTTCAATTG TCACTAGAGC GAATGAATGT AAAAAGCTGG TCTCCTATTA 
    TCAATTCCGT TTCTCTCTCG CCGGAATATT TTTGCTACTT CATCTCCTTA 
    TACCCCCACC ACCGTCACAT ATTCACTGGT AAGCATTTCC ATTTTGCTTC 
    CTCATCTTCC ACATTAGGCT TCTCCCATTT TTTTCTTCCT CCCGCCGCGA 
    ATCGCGCGTG ATTAGGGTTT ATGAAATCTA ACGCCTCAGG TTTCGCATTT 
    TCTCAAGTTT CTCGTTAATT TCGGTTAAAG AAGATGCCAG ACGTTCAATC 
    AACGGTGGTG GAATTTGTTA ACAAGCTCAG AAAGCGGTAA ATTCTTTCTT 
    TCTGGCTTAA TTTCGTAAAA CCCTTTGTGA ATATAATTGC TGATTGGATC 
    ATTATCTCAT ACAGTAAGAT TGAGGGCTCA CAGGCTACAG CCAAATACAC 
    CGTAGAGCTA CTTATGTCAG TAATTTCGCA TCACCGGGTG CCTCACGCTA 
    ACCAAGCTGC CGCTCTTATC GATGCTGTGA AAGCTGTTG

AT3G07300.1

Model type
Protein coding
Short Description
NagB/RpiA/CoA transferase-like superfamily protein
Computational Description
NagB/RpiA/CoA transferase-like superfamily protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649); BEST Arabidopsis thaliana protein match is: NagB/RpiA/CoA transferase-like superfamily protein (TAIR:AT2G44070.1); Has 4448 Blast hits to 4435 proteins in 1032 species: Archae - 365; Bacteria - 1744; Metazoa - 543; Fungi - 515; Plants - 227; Viruses - 0; Other Eukaryotes - 1054 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07300.2

Model type
Protein coding
Short Description
NagB/RpiA/CoA transferase-like superfamily protein
Computational Description
NagB/RpiA/CoA transferase-like superfamily protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649); BEST Arabidopsis thaliana protein match is: NagB/RpiA/CoA transferase-like superfamily protein (TAIR:AT2G44070.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07300.3

Model type
Protein coding
Short Description
NagB/RpiA/CoA transferase-like superfamily protein
Computational Description
NagB/RpiA/CoA transferase-like superfamily protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649); BEST Arabidopsis thaliana protein match is: NagB/RpiA/CoA transferase-like superfamily protein (TAIR:AT2G44070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07310.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF760)
Computational Description
Protein of unknown function (DUF760); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF760 (InterPro:IPR008479); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF760) (TAIR:AT5G48590.1); Has 147 Blast hits to 143 proteins in 27 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR