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GT22976

CSHL Arabidopsis genetrap mutant lines

Original: GT22976

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22976

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 459409 [Map]; Strand: w
      • AT2G01980.1 - [+] show detail - sodium proton exchanger, putative (NHX7) (SOS1)
        Distance: 0; Region: intron11 (CDS)
    Flanking Genome Sequence: GT22976 - 5-prime edge
    TTACCACTGT GCTAGGACTG AGACAATTGT ATTCTTTCAC CAGTCTGTTA 
    TTATTATTAA GTACCTGTTA GAGATGTACT GTCTTGGAAC AATATATTTT
    TTCTCTGGAA CCATATCTGC ATAAGGCACA TGATATACTT AACTTTAACT
    ATTTTTTATA TTTTGGATCT AACAACTCTT CACGACCCAA ATTTCTTACA
    GGGAATTCAT GGCGATTTCT TTTTCTGCTA TACGTTTACA TCCAACTATC
    GCGTGTTGTT GTTGTTGGAG TTCTATATCC ACTTTTATGT CGTTTTGGCT
    ATGGTTTGGA TTGGAAAGAA TCCATTATAC TCGTATGGTC TGGTTTGAGG
    GGCGCAGTGG CTCTTGCACT TTCTTTATCC GTGAAGGTTA ATTTTAAGAA
    CATCTGTTAA AGTTGTTCTT CTCTCTCGA

AT2G01980.1

Model type
Protein coding
Short Description
sodium proton exchanger, putative (NHX7) (SOS1)
Curator Summary
Encodes a plasma membrane-localized Na+/H+ antiporter SOS1. Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance. Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance.
Computational Description
SALT OVERLY SENSITIVE 1 (SOS1); FUNCTIONS IN: sodium:hydrogen antiporter activity; INVOLVED IN: in 7 processes; LOCATED IN: plasma membrane, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Na+/H+ exchanger, isoforms 7/8, conserved region (InterPro:IPR018418); BEST Arabidopsis thaliana protein match is: Na+/H+ exchanger 8 (TAIR:AT1G14660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR