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GT22996

CSHL Arabidopsis genetrap mutant lines

Original: GT22996

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22996

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185948 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1434; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4595; Region: intergenic
    Flanking Genome Sequence: GT22996 - 5-prime edge 
    GGCTTTCCGA AAAGGTATCA CATGCCAAGT TTGGCCTCAC GGTCTAAAAG 
    TTATGGAGTC ATAAAGTTTT AACCAAAACA AAAAAGGTTA AACATAAGAG 
    AGGGATGCAA CACGAGGACT TCCCGGGAGG TCACCCATCC TAGTACTACT 
    CTCGCCCAAG CACGTTTGAC TGCGGAGTTC TGATGGGATC CGGTGCATTA 
    GTGCTGGTAT GATCGCATCC GTTAGTATAT GCAATGCAAT CGTATATATT 
    CTTCTCTCTC GACTAGATGA ACCATTCGCC GTGGGTCCCA CCCGCTATGT 
    AGGGATACCC CATCTAGTCT TAACGAGCTT TGATGCATGA AAAAATTCGA 
    AAACGATGCT TGAACAAGTA ATTTTGGGTC CGTAATATAG CCCAAATCAC 
    GAAAATGCCC GAGAAGGTAC TTAAAGGTCA AAATTTGGGG TCGACAAAAA

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR