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GT23008

CSHL Arabidopsis genetrap mutant lines

Original: GT23008

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23008

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 91167 [Map]; Strand: w
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT23008 - 5-prime edge 
    ATAGCATATA TATGAAAACT TCTCTCTATT TCCTAGTTTA AATCTCTACA 
    GTCGTAGTTA ATTGGCTAGG ATTAAGGAAG TTAAGCGATC ATTTAGCACA 
    TATGTATTGT GAAGTTTTGT TGAATGTTTA CAAGGTTTGT TTCCAAGTGA 
    TTGAGATGAC AAATCTTCCT CTGTTCGCAA CAACCACGTT GTTTTACACT 
    TATTCCCAAG CATCATTTTT TTTTTTGTTT TATTTTTTAT TTGCAATAAA 
    CATATTTGGA ACCCCCATAC CCAAAATATA TCCAACCTTA GGCATTTGCT 
    TTCAAAAATT TGATTTTAGG AAAGAATTTT TCCAAAATTA CAACCAACCT 
    TTTTTTTATT TTTTATGACC AAGGCCTTTT GGGTTAAAAT TAAATTGTTT 
    AATTCACCAA ATTTTTTTCT AAATCGGGGG TCTTGATTGA CCATTTCCCC 
    CGGCCGGGTT TTTTT

AT4G00220.1

Model type
Protein coding
Short Description
Lateral organ boundaries (LOB) domain family protein
Curator Summary
Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.
Computational Description
JAGGED LATERAL ORGANS (JLO); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 18 (TAIR:AT2G45420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR