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Mutant Lines
GT23013

GT23013

CSHL Arabidopsis genetrap mutant lines

Original: GT23013

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23013

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 179765 [Map]; Strand: w
- AT4G00416.1 - [+] show detail - methyl-CPG-binding domain 3
  Distance: 252; Region: intergenic
- AT4G00420.1 - [+] show detail - Double-stranded RNA-binding domain (DsRBD)-containing protein
  Distance: 1558; Region: intergenic

CTGTCTGCCT AGTAATCTCC TTCTCTCTGA ACAAACTGCT ACCTAAATTA 
CTAGCAGCAA ACTTTGAATC ATACACGCTT CTTAGAATTC AAAGCTTCTG 
AAAGTCCATC TTTGAACAAC TCAACCTTTG ATTTATCTTT GCACTTCTGA 
TATTTTGACA GTCTTAGACC ATTCTGGTAG CTTTCCTTGT AGCTATCTCA 
CACTAACTGA TACAATGACG TTCTTGAGGC CCTTTTAACA CAATGATTTA 
ATCAACCTTG AGATCTTTGC AAATCATAGC TTTTGATCAT TCTCTGAAAT 
TCCTTCTCTT TGAAGCAACA ATATCGAAGG TCTCTTTCTC CTTGTGATAG 
CAACAGATTC ATAAATACTT AAATATGCGA ATCCTTCTCT TTAAGAACGA 
GCTATGAGAA GACTGATTCT TCACCACTAA CTTGTGTTTT ACGTTTCTTC 
AACAAACTTA ATTACAGGTT CTTTCATATT AATAACTCTT CATGATAAAC 
CAAGTTCTGA AGATGCCAAC GTAGAGATCA GTCTCAGACT CCATTACTCA 
AATGCCTTGT AGTTTCAAGC CAATGCTGAC ATTCATGTCT CTTTGCCTTT 
CATCTCTCTC GA

AT4G00416.1

Model type: Protein coding
Short Description: methyl-CPG-binding domain 3
Curator Summary: Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
Computational Description: methyl-CPG-binding domain 3 (MBD3); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 4 (TAIR:AT3G63030.1); Has 103 Blast hits to 103 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00420.1

Model type: Protein coding
Short Description: Double-stranded RNA-binding domain (DsRBD)-containing protein
Computational Description: Double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 1 (TAIR:AT1G80650.1); Has 64 Blast hits to 64 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR