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GT23014

CSHL Arabidopsis genetrap mutant lines

Original: GT23014

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23014

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1317294 [Map]; Strand: w
      • AT4G02960.1 - [+] show detail - transposable element gene
        Distance: -311; Region: promoter
      • AT4G02970.1 - [+] show detail - 7SL RNA1
        Distance: -205; Region: promoter
    2. Chromosome: 4; Position: 1474717 [Map]; Strand: c
      • AT4G03350.1 - [+] show detail - ubiquitin family protein
        Distance: -208; Region: promoter
    Flanking Genome Sequence: GT23014 - 5-prime edge 
    AATCTTTATT GACAAAGCAG AGCAAAAGAC AGTAAAGTTT CTTGCTTTAT 
    T

AT4G02960.1

Model type
Transposable element gene
Short Description
transposable element gene
Curator Summary
a copia-type retrotransposon element containing LTRs and encoding a polyprotein. This retro element exists in two loci in Landsberg erecta but only once in Columbia
Computational Description
copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR

AT4G02970.1

Model type
Protein coding
Short Description
7SL RNA1
Curator Summary
Signal recognition particle. Type 4 of RNA polymerase III dependent genes.
Computational Description
7SL RNA1 (AT7SL-1); CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT4G03350.1); Has 8670 Blast hits to 3996 proteins in 634 species: Archae - 0; Bacteria - 6; Metazoa - 3720; Fungi - 1035; Plants - 2265; Viruses - 166; Other Eukaryotes - 1478 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03350.1

Model type
Protein coding
Short Description
ubiquitin family protein
Computational Description
ubiquitin family protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: 7SL RNA1 (TAIR:AT4G02970.1); Has 8392 Blast hits to 3833 proteins in 622 species: Archae - 0; Bacteria - 4; Metazoa - 3676; Fungi - 1041; Plants - 2216; Viruses - 160; Other Eukaryotes - 1295 (source: NCBI BLink).
Link
InterPro Scan - TAIR