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GT23023

CSHL Arabidopsis genetrap mutant lines

Original: GT23023

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23023

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30382211 [Map]; Strand: c
      • AT1G80831.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 5730; Region: intergenic
      • AT1G80840.1 - [+] show detail - WRKY DNA-binding protein 40
        Distance: -1480; Region: intergenic
    Flanking Genome Sequence: GT23023 - 5-prime edge 
    TATTAGTAGC TGTTAAATTC TCACACTATA TATTAAATAA TAATTTTGTT 
    ACTTCGATTT TCTCAAACTA AAATCTATTT AGTTGTTTGT TTTTGGATCA 
    GCATACGTAT TTTCTTAAAA GTCATGCACA AATTTGGCTA CCGAACTTTA 
    TCAAAATCTC AGTGTCCTTC CTTTTTTCCT TCCCCCCCCC CCCCCCCTTT 
    TTTTGCCGTT AAAAATTAAA AAATGGCCCA GGGTTTAAAA TTTGGGTTTG 
    GAAAAAAAAA AAAAAAAAAA AAAAAAATTT TTCCTTTTTT TTAAAAAAAA 
    ATTTTGTTTT AAATTTTGGA AACCCCTTAA CCCCCAAGGC CAAAATTTTT 
    GGATTTTCCC CGGGATAAAC CCCCCAAAAA TATTTTTTTT TTTTTTTTTT 
    TCTTTTTAAA GGCAAACCTT AAAAAATTTT TTTTTTAATT TTCAAATTTG 
    GTTTAAACAA AACCAGGGGG GGCCCTTTTT TTTGTTTTGG AAAAAAAAAA 
    AATTTATTCA AAAACCCCCC CCCTTTTTTT ATTTTTTCCC CCAAAACCCC 
    CCCCCTCCTC CCCCCCCCAA AAAAA

AT1G80831.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80840.1

Model type
Protein coding
Short Description
WRKY DNA-binding protein 40
Curator Summary
Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.
Computational Description
WRKY DNA-binding protein 40 (WRKY40); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 18 (TAIR:AT4G31800.2); Has 3306 Blast hits to 2859 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3292; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR