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GT23050

CSHL Arabidopsis genetrap mutant lines

Original: GT23050

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23050

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11211903 [Map]; Strand: c
      • AT4G20960.1 - [+] show detail - Cytidine/deoxycytidylate deaminase family protein
        Distance: -43; Region: promoter
    Flanking Genome Sequence: GT23050 - 5-prime edge 
    AACATCAACG GTGGTAGAGA AATAGAGACG ACGACGACGA CGAGAAGATT 
    GGATTTGTAA TTGAAAGAGT CGGTTAAGAC TAACCGGAAA CCGTAACAGT 
    CATAACCATC GGTTTACTAG GCTATTTTAA ATTTTGTTTT AGACAGTTAT 
    ACATATCCGG TTTAAGAAAC ACCATTGAAT TGGTCTCAAG GGCCAACAGA 
    CTTGTCTCAA TAGAGATAAG AAATAAAGAA ACCCAAAACG CAAGAAACGG 
    AAAAGCATAC ATTGTTGATT GTATTTGGGG TCTCGCCCTT CTCAAGAATT 
    GGGGTCTCGC CCTTCTCAAG AAGCTCGTTA GCTCGCTCCT CTTCGTCAAG 
    CTCTTCAGAT CGCCTTTAAG CTCTTCAAGC TCCTCGGCTC GTCCTCAAGC 
    TCCTCAGCTC GTCCTCAAGC TCCTCAGCTC GTCCTCAAGC TCCTCAGCTC 
    GTCCTCAAGC TCCTCAGCTC GTCTTCAAGC TCCTCAGCGA CCAACTCCTC 
    GTCTAGCTAT CAGCTCATCC CTCGACTGCA AAACTCATCT ACCTCCTCGC 
    CTAGCGGCAG TTCGTCCATT GACTGCATAG TCCACCTATC TCGTCGCCCA 
    GCTCGTCTAC ACCAGCAAAC AACTCGGTTT GTCCAACTCG TCTCTCTACC 
    ACGGTTCATC CAGCTCGTCG CACATTTGCC GGCTCGTCAA CTACCTGCCG 
    ACCTACCTCC AATGACGGCC TAGCTCACTT ATTCTAATAT GAACTACCTG 
    TGGCTTGATC CCTTTC

AT4G20960.1

Model type
Protein coding
Short Description
Cytidine/deoxycytidylate deaminase family protein
Curator Summary
encodes diaminohydroxyphosphoribosylaminopyrimidine deaminase catalyzing the second step in the riboflavin biosynthesis
Computational Description
Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding, diaminohydroxyphosphoribosylaminopyrimidine deaminase activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Riboflavin biosynthesis protein RibD (InterPro:IPR004794); BEST Arabidopsis thaliana protein match is: cytidine/deoxycytidylate deaminase family protein (TAIR:AT3G47390.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR