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GT23060

CSHL Arabidopsis genetrap mutant lines

Original: GT23060

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23060

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2762164 [Map]; Strand: c
      • AT4G05460.1 - [+] show detail - RNI-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT23060 - 5-prime edge 
    CTGCCATCGA TGTGGCGTAA ATTGACATGC ATAACCTCGG AGATTTGGAC 
    GACATGGATT ACAACCTCGA GATCATGTGC CGTCACGCTG TTGATCGTAG 
    CCAGGGAGGC TTGGTTGATA TCGGTATTTG GTACTTTGGT ACTGTTGATC 
    TCCTCAATTA CATCGCCCAT AGGTTCTCTC TTTTACCACT CACAATCTCG 
    CCAAATTTTA TTTCCTTCAA AAGGAGTTTT TGATTCCTTG TTTAGAGAAC 
    TTGGATTGAT TTGATTTCAA TATGTTAGTT CTAGGGTTAG AACAGATTTT 
    GGTTGTGGAA GTTACTATTT CTTGTGAGAA TTGGGGAAAT TATTTGTAGC 
    TTATGATTGT GTTGTGTTAC ATTGTATCTA AATTCTATGT TGGAGTAGTA 
    AATAGTCACT TGATTATAAG ATTGTTATGC TTCTGAGGTA TGAATGGTTA 
    CGTTCAGGTT TTTATGGGAT GCTAGAAAAA AGATGTTTTG GATCTTTGTC 
    ATTCTTC

AT4G05460.1

Model type
Protein coding
Short Description
RNI-like superfamily protein
Computational Description
RNI-like superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G05497.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR