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GT23085

CSHL Arabidopsis genetrap mutant lines

Original: GT23085

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23085

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3583640 [Map]; Strand: c
      • AT3G11405.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 2281; Region: intergenic
      • AT3G11410.1 - [+] show detail - protein phosphatase 2CA
        Distance: 243; Region: intergenic
    Flanking Genome Sequence: GT23085 - 5-prime edge 
    CCTGCATTTT AGCACATAAT GTGTAATTAA AAGATTCAAG GATAATATTA 
    GAAACATAAA TCAACAAAAA TATATATATA TTGGGTGGAA GAGACTAATC 
    TGGACAATCA ATATAAGAAC TAGAAAGTAC AATGATTTAT TAATTCTTTT 
    AATACTAATG AAGATAATTA AGTTAAGAGA CTTGTCTGGC AACATTGTCG 
    AATGCTTAAT GTCAGTTAAG GTCGGAATCA ATAATCAATT AAACAGATTT 
    TGATTAAATT GACTAGAAAA TATCAACTAG GAGGGTAAGA AAAAGGAATA 
    TGATCTTCAC ATTCTTTTAT AAATAAATTA ATATCAACTT GAACAAAAAA 
    TAATACATAC TTTTAACCGT CCATTACTAG CCACTTGCCA CTTGCCACAA 
    TGACCAGATA ATAAAATCTT ATTCTATTCA ATCATGTTTT TATAAACCCT 
    TCACATTAAT GTTTGTTAGG TATTAATCAT ACGTTAGGTT ATGTTTTGTT 
    TTCTAAACCA ACAATTATTA TGGGGTTTTG TTGAAGACAT TTTTCGTAAA 
    CCTAGCATCT TTTGGATATG AAAATACCAC ATTTGAACCA AAACTACGGT 
    AAATTTATAT CCCCACGCGT GAAAAGTTCG ATTGGATAAT CCAATACATC 
    ACAATTGGTC GAAGTTTGGA GATTTCACCA TCAAAAAATA AGGCACTGCC 
    ATAAAATTA

AT3G11405.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11410.1

Model type
Protein coding
Short Description
protein phosphatase 2CA
Curator Summary
Encodes protein phosphatase 2C. Negative regulator of ABA signalling. Expressed in seeds during germination. mRNA up-regulated by drought and ABA.
Computational Description
protein phosphatase 2CA (PP2CA); FUNCTIONS IN: protein binding, protein serine/threonine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: in 6 processes; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: highly ABA-induced PP2C gene 2 (TAIR:AT1G07430.1); Has 6894 Blast hits to 6854 proteins in 510 species: Archae - 4; Bacteria - 413; Metazoa - 1689; Fungi - 773; Plants - 2747; Viruses - 7; Other Eukaryotes - 1261 (source: NCBI BLink).
Link
InterPro Scan - TAIR