1. Home
  2. Mutant Lines
  3. GT23105

GT23105

CSHL Arabidopsis genetrap mutant lines

Original: GT23105

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23105

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29735969 [Map]; Strand: c
      • AT1G79040.1 - [+] show detail - photosystem II subunit R
        Distance: -47; Region: promoter
    Flanking Genome Sequence: GT23105 - 5-prime edge 
    CTGCTGCCTA ATGTTCATCT CTCTCGACTA TCAATACGAG GGAGAGAAGA 
    TCCGGTAAGT GATTGTGGTT ATGACACGTG GCTAATGTTG TGTGGCTTTG 
    GTCTGGATAT CTTCCTTACT AACGTTATCT TCAACTGGTT AAGCAGATCC 
    GTCAGATCAG TTTTTTCTTC ATTTCGTAAT GCCACGAAGG AGATGAAAAA 
    AAACAAATGC CACGTAGGAT ATTCAATACT TTTTATTTTT CATTTGTGAC 
    CCCTACAAGT TATTTTATTT TATTTTTGAG AAAACCCCTA CAAGTTTTAG 
    TTTACTTAAA ACAACCCCAC TAGTTTGTCG TAAACTCGCA ATGTCTTCCA 
    CGTTGTGAAT TTTGCCAAGC GTTGAAATGA ACCGCAAATT CGTACACCGA 
    TCAGCGTTAA GATACTGCGT CTATAATTGC TCGCTCGCTG CGTCTGTAGT 
    GTTGACACTA GTAGATGATA TTATTTTTCT TTTCTTGATT AATCAATGTC 
    TAATGCTACT CAAATTATGG CTTCTCCATA ACTGGAAACA TCAACAAACT 
    TGACCATTGT CTAATGCAAG TTCTAATCAT ATTTACTAGT AACAAATAAA 
    TCTGTATATA ATACATGATT GTATCGTACA CAAAGGATTT GG

AT1G79040.1

Model type
Protein coding
Short Description
photosystem II subunit R
Curator Summary
Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gene have reduced amounts of subunits PsbP and PsbQ in PSII. In turn, assembly of PsbR is dependent on the presence of PsbJ.
Computational Description
photosystem II subunit R (PSBR); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosystem II oxygen evolving complex assembly, photosynthesis, response to light intensity; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, photosystem II; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein PsbR (InterPro:IPR006814); Has 134 Blast hits to 134 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR