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GT23107

CSHL Arabidopsis genetrap mutant lines

Original: GT23107

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23107

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6977733 [Map]; Strand: w
      • AT3G20010.1 - [+] show detail - SNF2 domain-containing protein / helicase domain-containing protein / zinc fi...
        Distance: 1138; Region: intergenic
      • AT3G20015.1 - [+] show detail - Eukaryotic aspartyl protease family protein
        Distance: 744; Region: intergenic
    Flanking Genome Sequence: GT23107 - 5-prime edge 
    AAATTTGGGG TCCTTGGTTT TGAGTCTGTT GTAGTTATCA TGAAACCCAC 
    TTCAGGATAT TTTGACACAA AAGGTGATAA TGGGAGTTGG AAAAATAGAA 
    AAAGTATCAC GGGGAAGTGA TGAATTGAAG AGGTGTGTGT AGCCCAAGTG 
    ATTCACACGA TTGTGACAAG AGATTATTAA GTTTGCTTTA AATGATTCAT 
    TCATCTCTCT CGA

AT3G20010.1

Model type
Protein coding
Short Description
SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
Computational Description
SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G50410.1); Has 24758 Blast hits to 15202 proteins in 1867 species: Archae - 89; Bacteria - 7985; Metazoa - 5530; Fungi - 5269; Plants - 2318; Viruses - 151; Other Eukaryotes - 3416 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G20015.1

Model type
Protein coding
Short Description
Eukaryotic aspartyl protease family protein
Computational Description
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G18490.1); Has 3754 Blast hits to 3736 proteins in 332 species: Archae - 0; Bacteria - 0; Metazoa - 1064; Fungi - 524; Plants - 1996; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink).
Link
InterPro Scan - TAIR