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GT23119

CSHL Arabidopsis genetrap mutant lines

Original: GT23119

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23119

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24529388 [Map]; Strand: w
      • AT1G65920.1 - [+] show detail - Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
        Distance: -94; Region: promoter
    Flanking Genome Sequence: GT23119 - 5-prime edge 
    TATTTATGTT CTTATAAAAA AACATGATTT TTTTAAGCTA AGTAGCTAAA 
    ACAGTGTAAT AGTATAAACG TACAATTTAA TACTTTTATT TCTTTAAATA 
    ACCAAAAAAA AATCAAGATT CTCGCTCCCA ACGTTTATGC CACCGAGTTT 
    GCTAAATTTA TTTTGTTCGC TGTTTTTTTG GTTCAAAATT TAAAATTTTT 
    GATAGCTTAA TAAATCGATT AAGTTTAAAC ACAATTAATT CACCAGTTCA 
    AAAAAATTGT GAGAGTAATG TCAAATGAAA AGTATCAAAT CTATTCTTTT 
    TCAAGAAAAG TTTAATTTAT TGTAACGGAA AAAAAAAAAA ATTAACCCTG 
    GTTTCAAAAA AGCCAAACAT TTTTTTTTGA AAAAGGGAAA GGATTTTTTG 
    GGGATTTAAA AATAATTTAA AAATTATAAA CTTTTAAAAT TGATTAGCTT 
    TTCAAATTTA AAAAAATTAA AAACCCCACC TTTTTGGTTA ACAAGGCAAG 
    GTTTTTTTTT CCCCCAACTG TGTCTAATTT TTTTAAATTT TAAAAATTCT 
    GGTTTAATTA AAAATGCTAA AGGGAATTTA A

AT1G65920.1

Model type
Protein coding
Short Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Computational Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Pleckstrin homology (InterPro:IPR001849), Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G42140.1); Has 20784 Blast hits to 8293 proteins in 486 species: Archae - 65; Bacteria - 2335; Metazoa - 8187; Fungi - 1149; Plants - 2727; Viruses - 3; Other Eukaryotes - 6318 (source: NCBI BLink).
Link
InterPro Scan - TAIR