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GT23130

CSHL Arabidopsis genetrap mutant lines

Original: GT23130

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23130

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11115553 [Map]; Strand: w
      • AT4G20725.1 - [+] show detail - transposable element gene
        Distance: -1187; Region: intergenic
      • AT4G20730.1 - [+] show detail - transposable element gene
        Distance: 2245; Region: intergenic
    Flanking Genome Sequence: GT23130 - 5-prime edge 
    TTCTCCCTGT ACCGAAGCAC CGAAACCAAA AACAAATATA GCAAAGGAAG 
    GAATTTAAAA GCAGTGGAGA TGGTAGGTTG AGAAGCTCTC CGGCGCCGGA 
    GATAAGGTCG AAAACCCGAC CTGACTGTTC GTCAAACGGA CTCAAGATCA 
    AGAAGTTATT CATCTCACTC GACGAACAAG AAACAATTGG AATAGTCCTC 
    AATGTGCCAA GTCTGAAACA AGATTTGATG TGCAACTAGA GCTTTTGCGA 
    GACATTTTCC CGACGCATCA GAAAGACCTA AGGTCTAACT AAGTACTCTT 
    AGCGAAGATC TCACTACAAG GAATCATTTC CCGTAAGCGG ATTACCAATT 
    GGTGTTAATC TCCATCTGCA AATCACCTTC AAAGTTGGCC CAGAATCATC 
    CAAACTGCAG AAATCAAGAA AAAACGACTT TGTCGTAGCG ACTTCAGAGG 
    ATCATGGAAG ATACATACGA CGTCCGATCT AGCTATAAAT TTACAGAGT

AT4G20725.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.2e-31 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT4G20730.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT3G10100.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09910.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799)
Link
InterPro Scan - TAIR