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Mutant Lines
GT23170

GT23170

CSHL Arabidopsis genetrap mutant lines

Original: GT23170

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23170

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 28558595 [Map]; Strand: c
- AT1G76110.1 - [+] show detail - HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
  Distance: -1009; Region: intergenic
- AT1G76120.1 - [+] show detail - Pseudouridine synthase family protein
  Distance: 75; Region: intergenic

GTCGTCGTCA TATAAAAGAT TTTCTTTATT TATGGAAGAG AGAAGAATCT 
TATTTGAACA AATGTTTATC GAATAAGAAT CGGTAAAAAA TGATTATAAG 
GAAGAAACGT GGAACCGAAT CTACAGGCAG AGGGACGTGA CGTTACATAT 
GAGCAGAACC ATATATAAAA TCCCTAATCG CACGTCAACC TCTCCGAAGC 
ATAAGGCCCA TAACTTTTTC TATTTAATTT TCTTGTCATT TTTACTATTT 
TAATTGTTAT TTAGGGTAAA TAAAATGTCA GACTTCGATT GACCCAATGA 
GTTTTAGGGT GTGACTCCTA TCTCCGTCTG CACTAATAAG TACTACTTTA 
ACTTTCGCTT ACCAATGCAT GTCAATACTC AACAGTGACA TATTTTTAAT 
TTTCAGAGGT TTTTCAATGC CCAAAAACTT TGATATTTAA AGATCGTACG 
TGTTTTAAAT TCCTCACCTA AAAATTGTCA AGTATCATTA GTGTATAAAG 
TGCATAGATC GTGTTACAAA TTCTT

AT1G76110.1

Model type: Protein coding
Short Description: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
Computational Description: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (TAIR:AT1G04880.1); Has 3338 Blast hits to 2805 proteins in 278 species: Archae - 0; Bacteria - 0; Metazoa - 2430; Fungi - 276; Plants - 321; Viruses - 0; Other Eukaryotes - 311 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G76120.1

Model type: Protein coding
Short Description: Pseudouridine synthase family protein
Computational Description: Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA, C-terminal (InterPro:IPR020095), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT1G20370.1); Has 3359 Blast hits to 3090 proteins in 1171 species: Archae - 124; Bacteria - 1897; Metazoa - 335; Fungi - 288; Plants - 173; Viruses - 0; Other Eukaryotes - 542 (source: NCBI BLink).
Link: InterPro Scan - TAIR