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GT23186

CSHL Arabidopsis genetrap mutant lines

Original: GT23186

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23186

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 152094 [Map]; Strand: c
      • AT4G00342.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: -182; Region: promoter
      • AT4G00350.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT23186 - 5-prime edge 
    AGCAGAGTTG ACGGCGCGTG GATAAGCTTG GTCGTCTCAT GCTCTGTTTC 
    GAAGACAGAG ACTTTGACGA CAAGCGGAGA GGATGGACCG CTATCGATGG 
    CGTCGTCAGC TGCTAAGGAG ATGGTTTGTT GTAATGGTCC GGCAGAGGAT 
    GAGGAGGATC TTCTCTCCTC TCGAACCGGG ATTTCCATTT TCACCGGTTG 
    TGGCAATATT TGTCTTAGTT TTTATATTTC TCTACTTGGG GAGGATTAGA 
    GACATGAGGA TTGAAAGCAG ACAAGACAAG AGATTCTTTT TTATGTTTGT 
    TCTTGTAATT TGTGTTTCTG GTTTGCCTAA GATTAAGGTT AGCCGTGGAG 
    TAGAAGAAGA GAGAACATGG GTTTATTGTG ACCGTTCATA TAGTTTAAAG 
    TATCGACATG GGTTTATTGA TTCAATCACG TAATGATTCT CATACAATAC 
    ATTCTGTAAG AATTTACATA TTAGCCATTA GAAGATTATC AAAGTGACAA 
    GAACTTTCAA ACTAAGAAGA AAGACATAAT CCATGGTTTT AACTGTTAAT 
    GTCGATTAAG TCAAATATCA TACAACCAAC AAATACAGTT TAAACTAATT 
    AAACCCTCTT AGAGAGCAAC ACTTATAACA TTTAAGGCTG GTTTTGACCA 
    AATCACCTTA CAAAATTGAT

AT4G00342.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00350.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: detoxifying efflux carrier 35 (TAIR:AT4G25640.1); Has 10139 Blast hits to 10053 proteins in 1934 species: Archae - 181; Bacteria - 7281; Metazoa - 140; Fungi - 324; Plants - 1355; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).
Link
InterPro Scan - TAIR