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GT23224

CSHL Arabidopsis genetrap mutant lines

Original: GT23224

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23224

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19615362 [Map]; Strand: w
      • AT2G47910.2 - [+] show detail - chlororespiratory reduction 6
        Distance: 0; Region: exon1 (CDS)
      • AT2G47910.1 - [+] show detail - chlororespiratory reduction 6
        Distance: 0; Region: exon2 (CDS)
      • AT2G47920.1 - [+] show detail - Kinase interacting (KIP1-like) family protein
        Distance: -415; Region: promoter
    Flanking Genome Sequence: GT23224 - 5-prime edge 
    CTTGGCTGCC TCTGCTGCTG GACTGGCGAG CTGGAGAACT TGCTCGATAC 
    GCAGCCATGT TAGTGCCGCA CCAGATGAGC TTGAGAATGG GTGTCGTTTT 
    CAATCCGGAG GCGTTGGAGC TTTTCGTAAT GAACAAAGTG TTTGTGGTTT 
    ATCCGTGGCT GAAACGGCAC GGCGTCCCAA AGCCCAGGTT GAAGACGAGC 
    GACATGGCCA GGATGCTCGG ATTCGGTATC GGCGATGAGC TCTTCGACTT 
    GATCGATCAC AATGAATGAA AAACGATGTG TTCTATCTTC AAATTACATA 
    CGTGGGCCTA ATTGTGGGCT TACAATGAAA AAGGCCTGGG GATGGTAATT 
    AAGAGGATTT TTTTGGGTAT TTGATACACA CGTGGCGAAT ATTCATTGGA 
    TAAGTTGTAT TAATAGCCGT AAAATCTGGG AAAATAAATT CAAAATCTCG 
    AATATCTGAA GAGAAGAGAG AGCCCATTCA AAATTTGAAA AACAAATCAA 
    CAATTGGTTT ATTCGTATCT TTCTCATTTC TCTCTAGTCT ATATCGCTCT 
    CAGAATACAA TTGGAAAAAA GAACAAGGTA TTTAGGAATC TCTCATTCTT 
    GAGTAGCTAA GCATTGAGGT CTCCTTTGCG TTTATAGATT ATTTTTTTTG 
    GTTGAAATTG TTTGGTTCTG TTGGG

AT2G47910.1

Model type
Protein coding
Short Description
chlororespiratory reduction 6
Curator Summary
Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain.
Computational Description
chlororespiratory reduction 6 (CRR6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: NAD(P)H dehydrogenase complex assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1817 (InterPro:IPR014946); Has 166 Blast hits to 166 proteins in 69 species: Archae - 0; Bacteria - 101; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47910.2

Model type
Protein coding
Short Description
chlororespiratory reduction 6
Curator Summary
Encodes a chloroplast thylakoid membrane protein. Required for the assembly/accumulation of the NAD(P)H dehydrogenase complex of the photosynthetic electron transport chain.
Computational Description
chlororespiratory reduction 6 (CRR6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: NAD(P)H dehydrogenase complex assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1817 (InterPro:IPR014946); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47920.1

Model type
Protein coding
Short Description
Kinase interacting (KIP1-like) family protein
Computational Description
Kinase interacting (KIP1-like) family protein; CONTAINS InterPro DOMAIN/s: KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: Kinase interacting (KIP1-like) family protein (TAIR:AT1G03470.2); Has 342 Blast hits to 342 proteins in 46 species: Archae - 2; Bacteria - 4; Metazoa - 5; Fungi - 4; Plants - 321; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR