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GT23254

CSHL Arabidopsis genetrap mutant lines

Original: GT23254

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23254

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20781673 [Map]; Strand: c
      • AT3G55990.1 - [+] show detail - Plant protein of unknown function (DUF828)
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT23254 - 5-prime edge
    TTCTCTCTGT CGACAGTCTC CTTTATCGAA CGATCCTCGT CTGATTTCAT 
    CGTCAATTTC CACAATCTCA ATTCACAAAA TTTGTAAAAT ACATAACACA
    CCATAGAGGT AATAATATTG AAGTAGTAGT AGACTTACAG GACTTTCATA
    GCGAATGTGT TCATCCACCA CATGTAAGTG TTGAAAACAA GAAAGTCCAC
    GCCTTTCCAC GTTGACTCCA TGCTTTTCAA TGGACTCAGG CATTATTATA
    CGGTTAAGTA TACTATGCAT ATTTGGATCA TCTGAATTCG ATTCCTCCAA
    AAATGGTGCC CAATAAAACT CCACCGTCGC ATTATAATCC TTTTTAAAAC
    CACCAAAAAA TTCAACATTA ATAACTAGAA AACTAATCCA CACTTATCTT
    AACTACTCTC GAAAATCAGC AACTCCACTA AACACATTAT CATTACTATA
    AGAAATAAAC TAGTCGGTTT CTATTACCTC GACTCGGAAG ACGGAGAGAG
    AACCGGTTTT GTTCAAGCTT TTTCGACCGG GAGGAACCAC TGAATGAACC
    AAACAAACCC ATTGATTCCC ATT

AT3G55990.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF828)
Curator Summary
Encodes ESK1 (Eskimo1). A member of a large gene family of DUF231 domain proteins whose members encode a total of 45 proteins of unknown function. ESK1 functions as a negative regulator of cold acclimation. Mutations in the ESK1 gene provides strong freezing tolerance. A member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
ESKIMO 1 (ESK1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to freezing, positive regulation of transcription, response to cold; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, fruit, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 28 (TAIR:AT2G40150.1); Has 1336 Blast hits to 1309 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1334; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR