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GT23258

CSHL Arabidopsis genetrap mutant lines

Original: GT23258

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23258

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 17688934 [Map]; Strand: w
      • AT5G43950.1 - [+] show detail - Plant protein of unknown function (DUF946)
        Distance: -266; Region: promoter
      • AT5G43960.1 - [+] show detail - Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RN...
        Distance: 0; Region: exon9 (3UTR)
      • AT5G43960.2 - [+] show detail - Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RN...
        Distance: 0; Region: exon9 (3UTR)
    Flanking Genome Sequence: GT23258 - 5-prime edge 
    AGCACATTGA TGAAGTTTGG AATTCAATCC AGTAAGGAAA CCAAAAATTG 
    AAATGTTATA CCAAAACTAA ACCATTCCCA AAGGGAGATA ACAGTCAAAA 
    GCTCTAAATG GCTAAATCTA TAACAAATTT AAAGAAAAAC ATATATAAGC 
    CAAAATCTTT GTTTCTTTGA GCCAAAAACC AAACCCAACA AAATAGAAAT 
    TACAAACTAC TTCTTCCGTA GATAAAGGAA GAAGAACTGA ATCATTTCAT 
    TCTTTGGTAG CACTAAAACT TTGACGAGAT TCTTTTTTCT TCTCACTCGA 
    CCAACCGCGG TAGTAACCAT TTCCTCTTGG CCTGTAGTCA CCTCCATCCT 
    GGTTTCCTCT GCCAGACCCA CGCCCACCAA ACCGGCCTCT TGGTGCTTCT 
    GTTGGGTAAC CACCCCTTCC ACGTCCTCCT CCTCTTCCTG ACCAAGTCAA 
    TACACATCAA AGTCAGAATG AGTTACATGT TGTACACTTT CTTTCTTATG 
    AGGCTTTCAC AAGACGCTCT TAAGAAATTT TATGATACAA AATTTGTTGG 
    TCATAGAGCA CGGTTTCAAA AGAAGACTTA CTTGCTCCGC GAACACCAGC 
    GGGATTTGGT CTTCGTTCCT CAATGTATAC ATGCCTTCCA CCCAAGTATA 
    TAGGAGAAGC CTATATATTA TTGTTACACA CACGGAAAAT GATAAGAACA 
    AAGCGAAAGG GGAACAGAAG ATGAAAATTA ATCTAGTGAG GTAACTGTGG

AT5G43950.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF946)
Computational Description
Plant protein of unknown function (DUF946); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT1G04090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G43960.1

Model type
Protein coding
Short Description
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
Computational Description
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT3G25150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G43960.2

Model type
Protein coding
Short Description
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
Computational Description
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT3G25150.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR