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GT23270

CSHL Arabidopsis genetrap mutant lines

Original: GT23270

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23270

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3108601 [Map]; Strand: c
      • AT3G10080.1 - [+] show detail - RmlC-like cupins superfamily protein
        Distance: -424; Region: promoter
    Flanking Genome Sequence: GT23270 - 5-prime edge 
    TATCATGCCT TGGGAGAAAC AAAAAGCTTA AGCAACAAAT TCATCATTTT 
    GAATATCATG GCATGCGCAC ACAGCACGCC TTATACGGGC CCCTGCTTCA 
    GCCCAAGACA TAGATTTGGT TATGCCTATA CCAAAATTAC ATTATAAACC 
    GGGATTGACA CTAGGATCCG AAACCTTGGA CTCCAGTTAT ATTTCCATTT 
    TTATGCACAA TTGTATTAAT TTGTAACTAT GAATTACATA GACGAATAGT 
    AAATTCATAA GAGATGTGTC AATCAAGCCA CAAAAGGGGT TTATCAGTCA 
    ATGTACCGGC CTAACCACTC CCATAACCAA AACCACATAT CCAAACGTGG 
    TTTTTCATTT GGTACAAAAA CCCACACCTT AATTTCACAG ACGAAATTTT 
    GGTTGATAAA AAGTAACCAT CTTAACCAGT CTCTCATTTA CCCCCACCAG 
    ATATACATAT GCTTATTTAA ACCGGATGTA ACACAACTCT TCATCTCTCT 
    CGACC

AT3G10080.1

Model type
Protein coding
Short Description
RmlC-like cupins superfamily protein
Computational Description
RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT1G18980.1); Has 1595 Blast hits to 1591 proteins in 125 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 57; Plants - 1448; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR