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GT23272

CSHL Arabidopsis genetrap mutant lines

Original: GT23272

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23272

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 33860 [Map]; Strand: w
      • AT4G00085.1 - [+] show detail - pre-tRNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT4G00090.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -231; Region: promoter
    Flanking Genome Sequence: GT23272 - 5-prime edge 
    CACAGAATGT AGCCCGTCTA GCTCAGTTGG TAGAGCGCAA GGCTCTTAAC 
    CTTGTGGTCG TGGGTTCGAG CCCCACGGTG GGCGATAGTG TTTTTTCTGT 
    TGTTTTTGTA AAGAGCTGAA GTTATAAATG GGCTTTGAAA TTAATGGGTT 
    CGAACACCAA CGGTGGGCCT TTTTTTCTTT CTATTTTTGT AAAGAGCTGA 
    ATTTTAAAAT GGGCTTTCAA ATTAATGGAT CAGTGAGGTT AAGGCCCATA 
    TTTTCTAATA AAATTAGAAG TAGTTACAAA CCCGACCCGA CCCGGTTACG 
    TGTATGCGGA GATCACTCTC CTCTCCATAA GCTAAGCTCT AGAAACACCG 
    CCTTTAACGT CTCGCTGCAC CATTTTTCAT CGTTGATCAG TCGTCGATCC 
    TCTTGAGTGA TTTGATTTTA GACTTTCTAC TTATCAAACT CGAAAGATGG 
    ATTCTGTCCT TGTAGTGGGC ATTGCATCGG TTATTCTCGG TGCGTTGATC 
    GCTGTACTCT TCTTCGGTAG CTACTTCCGG AAGCGGACAT CGGAGGTGCA 
    ATCCATGGCC AAAGCGGAGC CTCAGGATCC GATCCGGAAT CCAAAGTCGA 
    ATCATCCTGC TCCGAAGAAG AATCATCCCA AATCTCAAGC GTCCGATAAG 
    GTAAGGTTTT AACTCCATTT TGTTCCGAGT TTAGGGATTT CAGATTTGGA 
    TATGAGTTGA CTTTAAAGCT TTCTCTTCTT CGTTTCTAAA TTGCTTGTGG 
    AATGCAGAAT CAGAACAAAC GGCATCATCC TTTAGATTTA AACACGTTGA 
    AAGGCCACGG TGATGCTGTT ACTGGACTCT GTT

AT4G00085.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Lys (anticodon: CTT)
Link
InterPro Scan - TAIR

AT4G00090.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
Link
InterPro Scan - TAIR