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GT23275

CSHL Arabidopsis genetrap mutant lines

Original: GT23275

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23275

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11586460 [Map]; Strand: c
      • AT1G32172.1 - [+] show detail - other RNA
        Distance: 5913; Region: intergenic
      • AT1G32180.1 - [+] show detail - cellulose synthase-like D6
        Distance: 56; Region: intergenic
    Flanking Genome Sequence: GT23275 - 5-prime edge 
    GTTTATGTTG GTTTACAACC ATCCCATAGA TAAGAGAATG TAAATATATG 
    TTGTAGTGCT GGTGGGAACT GAAACAGAGT GGCGATATAA GAAACATAGC 
    ATACATTTTA GATATATCAT TACCGTTTAA GGTCCATTAT TGTTTATTTT 
    TATGTGGATT TTGGTTTTAT CAATCAAGAT TTTGTTTTGG ATGATTTTAT 
    TTGTTAAGAT TGTAGTTCTT GTTTTGTTCG ATTGTTAGTT TGTATTCTAT 
    TCTTCTCCCG CGACGACAAA ATCTATAAGA AAGACAAAGA TTAACACACA 
    AAACAAAACT GAACAGAAGA GGAAAAGAAA ACAGAACCAA ATCTTCTCCT 
    CAAGTTGTTA AGTTAAAGCA AGAGGGGAAG AAGAAGAAAC TATTCAAATC 
    TCGCAGATGA CTTGAGAAGA TCTCATGATA CTCATCGTAC AAAGCTTTTC 
    TTGGCTGCCC TAAAACTTTT CTCTTCAAAA GCATAATTTG AAATCTCACC 
    ATTCATCTCT CTCGACC

AT1G32172.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR

AT1G32180.1

Model type
Protein coding
Short Description
cellulose synthase-like D6
Curator Summary
encodes a gene similar to cellulose synthase
Computational Description
cellulose synthase-like D6 (CSLD6); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis, cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose-synthase like D2 (TAIR:AT5G16910.1); Has 3332 Blast hits to 2680 proteins in 615 species: Archae - 13; Bacteria - 1453; Metazoa - 5; Fungi - 21; Plants - 1756; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
Link
InterPro Scan - TAIR