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GT23287

CSHL Arabidopsis genetrap mutant lines

Original: GT23287

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23287

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 179464 [Map]; Strand: w
      • AT2G01410.1 - [+] show detail - NHL domain-containing protein
        Distance: -3057; Region: intergenic
      • AT2G01420.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: 641; Region: intergenic
    Flanking Genome Sequence: GT23287 - 5-prime edge 
    CCTAATACGA AAATGATCAG ATGATCAATT CATAACATTA AAAATGTTTG 
    AAAAATGAGA TTCACACTAC TTTGACATTA TAAAGACTAC GTTTGATAGT 
    CTCGGGACCA TTTTTTCTAT AAAGGGTGGT CTTTAGATTC ATGTGCGGAA 
    GTTCACAGAA TTTGAAGTTA ACATAAACTT TTTGAGATTT TTTTCTGCTA 
    GAGATCGTGT ATTCTTAAAA TAACGGGACC GTAAACATGC ATCGTATGAT 
    CATAGGATTA ATTAATTAGA GATTAGGATT TTGCTTCTGT CGTAAAACAG 
    TGTTTGTTAT CAAGGAATAT GCTTCAATTA ACTGTAATAA AATAAAATTA 
    CTGTCTTTTG GAACTTTTGC TTCTGACTGT TCAGACCTGA TTTCTATCAT 
    TGACAATCAA GACGATTGAC CGACATTCGC AGCAGAATTG GCATCCTATC 
    GCTCCTTAGT TTGTTTTTTC CTTTCTTTCC GTATTAGATT TCTTTCTCGT 
    AATTTTAACA CTCGAACTGA TTGTTTAGCT AAAAAAGCTC GGGCTAGAAA 
    TAATATTTTC TCCTATGTAA ACATAATGGT TCATGAATGG CTCTCTCTAG 
    CGGAGAATCT CTTCCCGACG AATTAATATT AATGGTGTTT GTGGAAAAAA 
    AAATCAGTAC GAGGGTGTAT ATATATAGTA TAGGACTATT TCAATCCAAC 
    TCATAAGCTA GTTTCAGTAT AAACCACTTA ACTAGAAACT TCAATTAATT 
    AAAAAAG

AT2G01410.1

Model type
Protein coding
Short Description
NHL domain-containing protein
Computational Description
NHL domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT2G16760.1); Has 137 Blast hits to 137 proteins in 39 species: Archae - 0; Bacteria - 57; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01420.1

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).
Computational Description
PIN-FORMED 4 (PIN4); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: root development, pattern specification process, auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1); Has 1811 Blast hits to 1602 proteins in 498 species: Archae - 31; Bacteria - 1046; Metazoa - 12; Fungi - 10; Plants - 485; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).
Link
InterPro Scan - TAIR