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GT23306

CSHL Arabidopsis genetrap mutant lines

Original: GT23306

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23306

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23443755 [Map]; Strand: c
      • AT3G63480.1 - [+] show detail - ATP binding microtubule motor family protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G63480.2 - [+] show detail - ATP binding microtubule motor family protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G63490.1 - [+] show detail - Ribosomal protein L1p/L10e family
        Distance: -448; Region: promoter
      • AT3G63490.2 - [+] show detail - Ribosomal protein L1p/L10e family
        Distance: -448; Region: promoter
    Flanking Genome Sequence: GT23306 - 5-prime edge 
    TCCGATAAGG AGAGGAGATG TCTAACGTAA CCGTCTGTGC GCGATTCAGG 
    CCGCGAAGCT CTAAAGAGAT GCGCGATCCC AGCAGAGATG GTGTCTGTGC 
    TCGACCCATC GACGCTGAAA CCTTCGTTTT CCAAGTTTGT CTACTCGACG 
    CCGTGTGCTT GATTAATATT GTCTCTCTCT CTTTGTCTCT CAAACTCTAT 
    ATAGCGTTTT TACTTGCGTG TAGGATGACA AGGAAGATGA ATTTACATTT 
    AGCCTCGATA GAGTTTTTTA TGAGGACTCT ACCCAAGCTG CGGTTTATGA 
    GTTTCTGGCT CTCCCCATCA TGAGAGGTAC TAATTGATTC CTTGATCTTC 
    TCTTTTGGAT TTTAGATCTA AACATTTGAG CACCAATCTT ATGATTTTAC 
    AATGTAATCA ACATTTTTGG TTTTGGTTTC CTCCTACCTT TGTCTTTTGC 
    ATCTTTTACC TTTGTACTAC TACTACTACT TTCAGACGCT GTAAATGGTA 
    TAAACGGAAC AATCATCACT TATGGACAGG TTTGTTCTTC TCTCTCGA

AT3G63480.1

Model type
Protein coding
Short Description
ATP binding microtubule motor family protein
Computational Description
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein 1 (TAIR:AT4G14150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63480.2

Model type
Protein coding
Short Description
ATP binding microtubule motor family protein
Computational Description
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein 1 (TAIR:AT4G14150.1); Has 10148 Blast hits to 9733 proteins in 305 species: Archae - 0; Bacteria - 0; Metazoa - 4474; Fungi - 1347; Plants - 1834; Viruses - 0; Other Eukaryotes - 2493 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63490.1

Model type
Protein coding
Short Description
Ribosomal protein L1p/L10e family
Computational Description
Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, bacterial-type (InterPro:IPR005878), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42710.1); Has 9168 Blast hits to 9162 proteins in 2816 species: Archae - 276; Bacteria - 5341; Metazoa - 152; Fungi - 277; Plants - 105; Viruses - 0; Other Eukaryotes - 3017 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63490.2

Model type
Protein coding
Short Description
Ribosomal protein L1p/L10e family
Computational Description
Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: chloroplast thylakoid membrane, ribosome, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 3-layer alpha/beta-sandwich (InterPro:IPR016095), Ribosomal protein L1, bacterial-type (InterPro:IPR005878); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR