1. Home
  2. Mutant Lines
  3. GT23312

GT23312

CSHL Arabidopsis genetrap mutant lines

Original: GT23312

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23312

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28357378 [Map]; Strand: c
      • AT1G75520.1 - [+] show detail - SHI-related sequence 5
        Distance: -3883; Region: intergenic
      • AT1G75530.1 - [+] show detail - Forkhead-associated (FHA) domain-containing protein
        Distance: -1931; Region: intergenic
    Flanking Genome Sequence: GT23312 - 5-prime edge 
    ATAGATATAA TGCATTGAGA AGATTGTGCG GGAAAATACT GTTACGTGAG 
    GAGAATGATT GACTACCATA TAAAAAGATA CTAGTACTAT ATAGGAGAGA 
    GAGAGAGAGG AGATGCAGCG AGAAGAAAGG TGAGCACAAG GCTCGAGAGT 
    GAAAGACAAC AACTAAATAA TAATTGGACT ATTGGAGCTA ATCCTTATTC 
    TTGATTTTTC CCCTACGATG ACCTTTGCTC CTCACTCTCT GTCTGACTTG 
    TGGGAGGTGA CAAAATCTAG TAATAGAAAG AATCATAATT ATAACAACCG 
    AGAACACCTC GGCTAAAAAA GGAAAAAAAA ATATATCACC TCTGATAACC 
    ATGCCAATGA ACCCCAATGC CCACAATCTG ATATTAAATA GTATTTCGTC 
    TTTGTGTTCT ATGGCTGAAT AAGGCGGGGC ATTGTTTCGG CATTATCTAA 
    ACCTTTATTG GCTTTACTGT GATTTGAAGC TAACTCTCGG AAAAATATAC 
    ACTTTTTTAT AAATTAAAAA GAAACATTAG ATGTCTCCTT TAAAATGGAA 
    TGATAGTGTT TGTGGTGTTT TTAAAAAAAA ATA

AT1G75520.1

Model type
Protein coding
Short Description
SHI-related sequence 5
Curator Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.
Computational Description
SHI-related sequence 5 (SRS5); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 299 Blast hits to 299 proteins in 34 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 2; Plants - 180; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G75530.1

Model type
Protein coding
Short Description
Forkhead-associated (FHA) domain-containing protein
Computational Description
Forkhead-associated (FHA) domain-containing protein ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: Forkhead-associated (FHA) domain-containing protein (TAIR:AT3G54350.3); Has 370 Blast hits to 247 proteins in 81 species: Archae - 0; Bacteria - 2; Metazoa - 217; Fungi - 16; Plants - 96; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR