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GT23314

CSHL Arabidopsis genetrap mutant lines

Original: GT23314

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23314

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2345345 [Map]; Strand: w
      • AT3G07340.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -1875; Region: intergenic
      • AT3G07350.1 - [+] show detail - Protein of unknown function (DUF506)
        Distance: -2123; Region: intergenic
    Flanking Genome Sequence: GT23314 - 5-prime edge 
    CTTGTCATGT TCTTGTTCTT ACAAAAGATT ATTAGATATT GTCACTTGTT 
    CGTTACCTCA TTCCAAAGAA CTCTTCACAC CTCCCAAATC CCAACTTTTC 
    CTTCCATTAA ATTAAGAAAA GTTGTTCGGT CAGGTTCTGT TTCACTCCAA 
    TATGAGTTTC AGTTGGTGTA TTTTATCCCC TCTTCACTTT TGATGTTGGA 
    AAAAAAAACT CGAAACCTTC CAAGTAAGGA AAAACTTATG ATCATTAGTC 
    TAAATCAATG ATGATTGTCT TATAATACAA CACAAATGTT AGCCTTCTTG 
    TTTGCTTGAG CTGATGAGCT CTATGATGTT CCAATTAATT GATTTTGTTT 
    CGAAAACAGC AATTGCAATG GAAGACGATT TATGTTTGAG ACTAACAAAA 
    TTGGAAAAAC TCCGTCATCG GTTAAAATAC CATTTGAAGT AAGTTTTGGT 
    GCATGCTTAG TCGACAATGA CTTTACTATA TAGTACTTGT TGTTCTCTCA 
    CTCTCCCACG AAATTGCTTG TTTCATAATA TCGTGGACCT GGACTGGAGA 
    GTATACCTCA TTCATATCTT AAGTTCAACC ACCAATTAGG ACCGAGTCTT 
    TAATGGACTT GTTCTCCATT TCAGCCACAA TTTTCTTGTA TCACAAAACG 
    GATCATTAAT TATGCTTGGC ATAAAACAAG ATTATTGGTA ATTTTAAAAA 
    GAATTTAAAA AATTACAGAG ACGCTGCTAC ACCTTTCCCT TTCATGAAAA 
    GCCAAAAGAA ATGGATTAAT TCAAGAAAAA AACAGGATAG GGAAACAAAG 
    GTGAAAGGCT CTTTGGTTGG TTCTTGGC

AT3G07340.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G48560.1); Has 2639 Blast hits to 2308 proteins in 133 species: Archae - 0; Bacteria - 4; Metazoa - 62; Fungi - 52; Plants - 2177; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07350.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF506)
Computational Description
Protein of unknown function (DUF506) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT3G25240.1); Has 393 Blast hits to 390 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 391; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR