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GT23337

CSHL Arabidopsis genetrap mutant lines

Original: GT23337

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23337

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26242499 [Map]; Strand: c
      • AT1G69760.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -1791; Region: intergenic
      • AT1G69770.1 - [+] show detail - chromomethylase 3
        Distance: 5819; Region: intergenic
    Flanking Genome Sequence: GT23337 - 5-prime edge 
    CTCCCTGCAT GTAGTTGTAT TCATCATCTC ACCAGACACC TCTCTTTCTC 
    TTTTTTTGAT TTGCTGTTTT CATTTTTATA TTCTACTATC TTTTTAACTG 
    TATCTTGCTT TTTTTGTTTT TCTCCCATAC GTTTTAGAAT AAATTTTGGT 
    CCAAGTCGGT TCGATAAAGC GAAAAATTAT AATAGTATAA CCTCGTGTAT 
    ATATTTTTTC ACAGATATTA TAAGGTCGTG TAAATTTCAA ATCGAGATCG 
    ACGTTAAAAG GTATATTAAG CAGTTGGTTG TACAAAGAAA ATTTATATTA 
    TTATGCATAT TTTGTTTGCT TCCTACTTTT AGTATAAATT GAAACTAGTA 
    TAATAACTTT CGATTTGTAG TATTTTTTAC AAGAAAAAGC GTACCGACGT 
    TGAAAACACA AGTTTCGTAG ACTTATTTAA TAAAAAAATG TGGTACCTTC 
    TTTTTGTTTG GGCAAACAAA GATGTGGTTA CCTTCATCTC ACTCGAC

AT1G69760.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26920.1); Has 51 Blast hits to 51 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G69770.1

Model type
Protein coding
Short Description
chromomethylase 3
Curator Summary
Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing.
Computational Description
chromomethylase 3 (CMT3); FUNCTIONS IN: DNA (cytosine-5-)-methyltransferase activity; INVOLVED IN: in 6 processes; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), DNA methylase, C-5 cytosine-specific, active site (InterPro:IPR018117), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 2 (TAIR:AT4G19020.1); Has 4337 Blast hits to 3739 proteins in 974 species: Archae - 208; Bacteria - 2545; Metazoa - 230; Fungi - 161; Plants - 416; Viruses - 30; Other Eukaryotes - 747 (source: NCBI BLink).
Link
InterPro Scan - TAIR