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GT23383

CSHL Arabidopsis genetrap mutant lines

Original: GT23383

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23383

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 368631 [Map]; Strand: c
      • AT4G00880.1 - [+] show detail - SAUR-like auxin-responsive protein family
        Distance: -1357; Region: intergenic
      • AT4G00885.1 - [+] show detail - MIR165/MIR165B; miRNA
        Distance: 1225; Region: intergenic
    Flanking Genome Sequence: GT23383 - 5-prime edge 
    AATAAAGTTT GGATGTGAAG TTATTCAGTA CAATTAACCT AAATATTTAA 
    TGTGACTGAC TAAAACTAGC TAAATAGGGT TCACGGGAAA TTGAAGCTTT 
    TGACTATGGG AAAATATATC AAAAAGAGAT TGAAAAGTCT TTTGTTTTTG 
    CTTTGTCAAA GTGCTTTATC TTCTTCATCT CACTCGACC

AT4G00880.1

Model type
Protein coding
Short Description
SAUR-like auxin-responsive protein family
Computational Description
SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT2G46690.1); Has 1421 Blast hits to 1407 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1420; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00885.1

Model type
miRNA
Short Description
MIR165/MIR165B; miRNA
Curator Summary
Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUCCCC
Link
InterPro Scan - TAIR