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GT23473

CSHL Arabidopsis genetrap mutant lines

Original: GT23473

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23473

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12495108 [Map]; Strand: c
      • AT4G24040.1 - [+] show detail - trehalase 1
        Distance: 3873; Region: intergenic
      • AT4G24050.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -1947; Region: intergenic
    Flanking Genome Sequence: GT23473 - 5-prime edge 
    AGCTTCTCTC CCTCCTTGCC TTTTTCGTAT TGTCCTTGTC GTGTCTTGAG 
    TACAAGATTC CAGCTCATTG TCACGTTGGT AGCTCGATTA CGCTTATCCA 
    AAAGTGAGTT CGAGTGAATA TTGAACTCTT ACTCTCAATC AGTGTTTTCT 
    TACCCACCTT TTTTTTTCTT GGAGATAATG TGTAGAAAGT ACTCTTTTTG 
    ATCTAGTATC TTCGAGTACT CTAGTTTTGT CAAAGACTTT TCTATATAAG 
    AAACTTGCTT CATCTCACTC AA

AT4G24040.1

Model type
Protein coding
Short Description
trehalase 1
Curator Summary
Encodes a trehalase, member of Glycoside Hydrolase Family 37.
Computational Description
trehalase 1 (TRE1); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 37 (InterPro:IPR001661), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 37, conserved site (InterPro:IPR018232); Has 1925 Blast hits to 1909 proteins in 569 species: Archae - 2; Bacteria - 1056; Metazoa - 507; Fungi - 235; Plants - 71; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G24050.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G64590.1); Has 59308 Blast hits to 59247 proteins in 3068 species: Archae - 448; Bacteria - 39701; Metazoa - 3820; Fungi - 3579; Plants - 1905; Viruses - 0; Other Eukaryotes - 9855 (source: NCBI BLink).
Link
InterPro Scan - TAIR