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GT23543

CSHL Arabidopsis genetrap mutant lines

Original: GT23543

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23543

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28569299 [Map]; Strand: w
      • AT1G76135.1 - [+] show detail - MIR394B; miRNA
        Distance: 371; Region: intergenic
      • AT1G76140.1 - [+] show detail - Prolyl oligopeptidase family protein
        Distance: -1831; Region: intergenic
    Flanking Genome Sequence: GT23543 - 3-prime edge 
    TTTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGTAGG GAGTAATGGG 
    TCCTCTTTCT TTATGAAATA ATTTACCTTT CCTAGATGAT GTAAACGTCT 
    CAAACGCCAC CACTACTCTG AAATCTCACA TTTGTCAACG CCGTTGCAAT 
    TTAAAAAGAT GATGAGTTCC TACAATGAAT GTATCAATCG GATTAGTCTT 
    GATCAAGATC AAAGTTTGAC AGATAAATCA AAGGAGACAG CAAAATTCAA 
    ATGAATTTTA CTTAATCAAG AACAAGTAAC GCTCACAGTC ACAGATAACA 
    AAAAAGGTTA AAGTTTCGAG ATAATACCTA GTTTTCTTCA AACTTAGATC 
    TTAGTAGTAT TCACCGAATG ATATTGATCA CTATCTTTAT ATATCAAATC 
    ATGAGGGGTT TTACAAAGAA ACCCTAACAG ATCTCTATTG GCAGTATGCC 
    CACCTCCTCT TACAAAACAC ACCGTAGATA CGTACACTTA TTACACATAA 
    ATATAGAGAG AGGAGGTGGA CAGAATGCCA AAGATCTCTG TAAGAGACTC 
    TTTTGTCAAA CCCGCATGAT CAAAAAGGTT AAAGATCCAA AAACAAATCA 
    CTCATTTCCT CTCTGTCG

AT1G76135.1

Model type
miRNA
Short Description
MIR394B; miRNA
Curator Summary
Encodes a microRNA that targets one member of the F-box family. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGCAUUCUGUCCACCUCC. It targets F-box protein AT1g27340.
Link
InterPro Scan - TAIR

AT1G76140.1

Model type
Protein coding
Short Description
Prolyl oligopeptidase family protein
Computational Description
Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G20380.1); Has 8127 Blast hits to 8050 proteins in 1368 species: Archae - 105; Bacteria - 3923; Metazoa - 339; Fungi - 43; Plants - 244; Viruses - 0; Other Eukaryotes - 3473 (source: NCBI BLink).
Link
InterPro Scan - TAIR