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GT23544

CSHL Arabidopsis genetrap mutant lines

Original: GT23544

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23544

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11140720 [Map]; Strand: c
      • AT4G20800.1 - [+] show detail - FAD-binding Berberine family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT23544 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TGCCTGTGGG AACATCGACA 
    AGCGTTTTAT TGGATAGACC ATCGGGTCCC GCAGGAGCAT TCTACAAGAG 
    TAAATCGGAT TACGTCAAGA AACCGATCCC AAAGGAAGAA ATGGAGAAGA 
    TCTGGAAAGC AATGTTGAAG TTCAACAATA TGTGGATGCA ATGGAACCCT 
    TACGGTGGAG TGATGGACAA GATTCCTGCT GATGCCACCG CGTTTCCTCA 
    TCGAAAAGGA AACTTGTTCA AGATTCAGTA CTTTGCGTTA TGGACAGACG 
    CAAACGCCAC AGACGCTAAT CTTGGTCTAA TGAGAGATAT ATACCATGAG 
    ATGGAGCCGT ACGTGTCAAG TAACCCTAGA GAGGCGTTCT TGAATTACAG 
    AGATATCGAT GTCGGAAGCA ATCCGAGTGG TGAGACCAAT CTTGAAGAAG 
    CTAAGATCTA TGGATCGAAG TATTTCTTGG GGAATTTTAA GAGATTGATG 
    GAAGTTAAAG CAAAGTATGA TCCTGAGAAT TTCTTTAGAT TCGAACAAAG 
    TATTCCTCCT GCTAGTGCAA TGTAACTCTT CTGAAGGGTT TTTTGAATGT 
    TTAATAAGTC ATATGAGCAT TTAACCAATA AAATTAAATT AAAGTAATCA 
    GCCTGCATTA TAACTCATGA AAGGATTGTC TGTTTTGTGA GTCGTGTTA

AT4G20800.1

Model type
Protein coding
Short Description
FAD-binding Berberine family protein
Computational Description
FAD-binding Berberine family protein; FUNCTIONS IN: oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, synergid; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G26420.1); Has 4385 Blast hits to 4167 proteins in 621 species: Archae - 36; Bacteria - 1918; Metazoa - 13; Fungi - 1639; Plants - 666; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).
Link
InterPro Scan - TAIR