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GT23546

CSHL Arabidopsis genetrap mutant lines

Original: GT23546

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23546

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18803934 [Map]; Strand: c
      • AT2G45650.1 - [+] show detail - AGAMOUS-like 6
        Distance: -416; Region: promoter
    Flanking Genome Sequence: GT23546 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TAACACTAGG ATAGCTTGAA 
    AAGGGTACAA TAACTAGCTA TAGAAGAACA TGAGCCATAA CATTTGGAAA 
    CAAAATGAGT TAGTTTGAAT TTGAAACATC GCGCTCTATG TAAAAAAAGC 
    AAAAAAGAAA AGAAAAGAGT CCTAATAATT AAAAAGAGAA AATAAAAGGA 
    ATTTTCAATG GTCCGACTGT TACAAGTAGA TTTCCATTTT TAGGAATCTA 
    GCTATAACGA TGAAGACAGA GTTATCATTT TGTTCCATCA AATATATGAC 
    GATATTTATA TTTAATTTCT TCAACAACAA ATATCTCATT TGTTGGTGCC 
    ACTTTCATCT CACTCGACC

AT2G45650.1

Model type
Protein coding
Short Description
AGAMOUS-like 6
Curator Summary
sequence suggests this encodes a MADS-box transcription factor
Computational Description
AGAMOUS-like 6 (AGL6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: vegetative to reproductive phase transition of meristem, floral organ development; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 13 (TAIR:AT3G61120.1); Has 7294 Blast hits to 7293 proteins in 914 species: Archae - 0; Bacteria - 0; Metazoa - 630; Fungi - 307; Plants - 6281; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Link
InterPro Scan - TAIR