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GT23560

CSHL Arabidopsis genetrap mutant lines

Original: GT23560

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23560

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19551026 [Map]; Strand: w
      • AT2G47680.1 - [+] show detail - zinc finger (CCCH type) helicase family protein
        Distance: -121; Region: promoter
      • AT2G47690.1 - [+] show detail - NADH-ubiquinone oxidoreductase-related
        Distance: -237; Region: promoter
      • AT2G47690.2 - [+] show detail - NADH-ubiquinone oxidoreductase-related
        Distance: -237; Region: promoter
    Flanking Genome Sequence: GT23560 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TACTTGAGAG ATCAACGAGC 
    GAGCTACACG TACGCTCGTC GCACCTGATC GACGCTCCCC TAAAACCCCC 
    CTAAAAGCGT AGAGAGGAAG GATGTGATTG GCAGTATTAG AAATACCAGA 
    GACTGGACTA GACTCTGTGT GTAGAGGAAG AGAGACAGTG CTCCGCGTAC 
    GACAACAATG GCGGTTTCTT CGCCGACTTC GTCTTCCAGC TCTTCTGAAT 
    CGTTACCTTT ACCCTCCTCC AACTTCGCTT CGCTTCCGAT TATGGCGATG 
    AAAAGGAGAA TCATCGACAA AATCCTCGAG AATCGCGTCA CTCTCATCGT 
    CGGCGAGCCT GGATGCGGTA CCTGCGCTCG CCTTCTTCTT TCTCTTATTC 
    TATTTTTCTT CCTTCATCTC ACTCGACC

AT2G47680.1

Model type
Protein coding
Short Description
zinc finger (CCCH type) helicase family protein
Computational Description
zinc finger (CCCH type) helicase family protein; FUNCTIONS IN: helicase activity, zinc ion binding, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G01130.1); Has 9601 Blast hits to 8936 proteins in 1526 species: Archae - 0; Bacteria - 3317; Metazoa - 2456; Fungi - 1337; Plants - 806; Viruses - 205; Other Eukaryotes - 1480 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47690.1

Model type
Protein coding
Short Description
NADH-ubiquinone oxidoreductase-related
Computational Description
NADH-ubiquinone oxidoreductase-related; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, iron-sulphur subunit 5 (InterPro:IPR019342); BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-related (TAIR:AT3G62790.1); Has 131 Blast hits to 131 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 64; Plants - 56; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47690.2

Model type
Protein coding
Short Description
NADH-ubiquinone oxidoreductase-related
Computational Description
NADH-ubiquinone oxidoreductase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-related (TAIR:AT3G62790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR