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GT23594

CSHL Arabidopsis genetrap mutant lines

Original: GT23594

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23594

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17708936 [Map]; Strand: c
      • AT2G42520.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: exon7 (3UTR)
    Flanking Genome Sequence: GT23594 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTAAAATGAA AACGGGTTGT CATAAAAACA 
    GTCATCAGTT TCACAGTTTC TTTATAATTG AGGATCAAAA TGAGAGAAGA 
    TTTTGACAGA TTTTTCCCGA ATCCAACTCA TAAATACTAC TATGTTACTT 
    GTAGTCACTA ATATGTAGTT TATATTTAAA TCATTTGATA CGTATTTAAA 
    ATGTGCTAGT GAGTAATTAA CAGCTCTTCA TTTCAAATGG CGAAAAAGAA 
    ATTACAACAA ACTGATCTTA TTGTAAACTA TTGAACATGA CTACATGAGT 
    GGTTGAATCA GGACTTTGTG GCATTCTTAG CCTCTTCTGC TTTACCCTCT 
    ACGAACTCAG CCGCCTTGTT TCCGGCTTCT TTTCCTTTCT CAGTCACATA 
    ATCCAAAGCT TTCTTAGCTT CCTCAGTCGC AGTTTCATTG GCTTCAATGG 
    TTTTCTCAAC AATGTAGTCT TTTGTTTTCT CGCCATCCGC CAAGGCCTCC 
    TTCATCTCAC TCGACC

AT2G42520.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT3G58510.3); Has 140248 Blast hits to 67514 proteins in 3679 species: Archae - 1004; Bacteria - 58923; Metazoa - 37605; Fungi - 9665; Plants - 13202; Viruses - 1099; Other Eukaryotes - 18750 (source: NCBI BLink).
Link
InterPro Scan - TAIR