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GT23662

CSHL Arabidopsis genetrap mutant lines

Original: GT23662

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23662

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10334512 [Map]; Strand: w
      • AT5G28370.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    2. Chromosome: 5; Position: 10374973 [Map]; Strand: c
      • AT5G28450.1 - [+] show detail - Chlorophyll A-B binding family protein
        Distance: -783; Region: promoter
      • AT5G28460.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT23662 - 5-prime edge 
    TCTCCGATTT GATTTCCGGC CGTGGGTCAA CATCATAAGA AAAACGCCGG 
    AGGAATCGAG AATGGTTGAG CAGAATATAA CAGTTCTGGC GCCGGGAAAT 
    TGATAGCATG ATACTCATTG TCTAAGGTTT TGAAAAAGAC GGCCACCGGG 
    AAAAGTGAGA CGACGAACTC TGTTGGCGAA TTCAACGTAC AAGAAGTTGG 
    GCCCATTTTA AATAATGGGC TTACACATAT TTAGCCCAAA TAAACCTTTA 
    CAATATTACA CAATGGGGAC ACAAATTTAT TTTTTCTCAT AAAACTGAAC 
    GTGAGCTTTT TTTTCTCATA ACAAAATGAG GACGAATCTT TATTTTTCTC 
    AACTAATTAT CCTCTTTGTT TTATTAATCA AGCCACCACC CTGAACTCTG 
    AAATAGCTCC TATGGAATAT GGATTACACT AGTTTTACCC GCTAATAACT 
    ATCCTATTAA AGGGTTTTTA TTTCTTCAAC CTACTCAAAA TGAAGGAAGA 
    GCTACGAGAA TTGCAACAGC TTTGTCACTG AGAAGATGGT GAATCTGAAT 
    GATCCATCTT TTCAGCTGAT GCTGCTGCAT CAAAAGCAGT TTTATCT

AT5G28370.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 52907 Blast hits to 14569 proteins in 306 species: Archae - 7; Bacteria - 68; Metazoa - 890; Fungi - 845; Plants - 49290; Viruses - 0; Other Eukaryotes - 1807 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28450.1

Model type
Protein coding
Short Description
Chlorophyll A-B binding family protein
Computational Description
Chlorophyll A-B binding family protein; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 2 (TAIR:AT3G61470.1); Has 1998 Blast hits to 1946 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1792; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28460.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G61520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR