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Mutant Lines
GT23686

GT23686

CSHL Arabidopsis genetrap mutant lines

Original: GT23686

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23686

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 3; Position: 940057 [Map]; Strand: c
- AT3G03740.1 - [+] show detail - BTB-POZ and MATH domain 4
  Distance: -249; Region: promoter
- AT3G03750.1 - [+] show detail - SET domain protein 20
  Distance: 0; Region: exon1 (CDS)
- AT3G03750.2 - [+] show detail - SET domain protein 20
  Distance: 0; Region: exon1 (CDS)

TACCGACCGT TACCGACCGT TTTCATCCCT AATTATTCCG GCCGCCGATC 
GATTTCTCCG ATGTGCGAAT TTGATTCTCC CATGGCTAAA CCCTCGAGAA 
CTCGCCGTTG TTGCTCAAAC CTGCAAAACC TTATCCCTAA TCTCGAAATC 
TCTAACCATT CACCGATCTC TCGACGCTGC ACGATCCTTG GAAAACATCT 
CAATCCCGTT TCACAACTCC ATCGATTCTC AACGATACGC GTACTTCATC 
TACACACCTT TTCAGATCCC CGCTTCATCT CACTCGACCA GATCGTATCG 
CTACCCGACC GGATCGTATC GGTATATTCA TCTCACTCGA CCAGATCGTA 
CCGCTACCCG ACCGGATCGT ATCGGTATAT TCATCTCACT CGACCAGATC 
GTACCGTTAC CCGACCGGAT CGTATCGGTA TATTCATCTC ACTCGACAAG 
ATCGTACCGC TACCCGACCG GATCGTATCG GTATATTCAT ATCACTCGAC 
AAGATCGTAT AGTTACCCGA CCGGATCGTA TCGGTATATT CTTCTCACTC

5 prime edge [+] show sequence

Chromosome: 3; Position: 939961 [Map]; Strand: c
- AT3G03740.1 - [+] show detail - BTB-POZ and MATH domain 4
  Distance: -153; Region: promoter
- AT3G03750.1 - [+] show detail - SET domain protein 20
  Distance: 0; Region: exon1 (5UTR)
- AT3G03750.2 - [+] show detail - SET domain protein 20
  Distance: 0; Region: exon1 (5UTR)

GGAAGCTTCT CCAGACAACG CGTCTTCGGT GGTGGTGACT CTCGCAGTCG 
CTGCATATTT TTTCTCAGCC AGCGATATAC AAACGACGTC GTTGCGTTTA 
ATTCTATTTA TATCCTTAAA TTCTATTTTA ATTTCACTTC AGTAAGAATT 
TTTTAAAGAA AAATGGCGAG TTTTTTTGTG TTAATCATAA CTATAGATTT 
ACTACCGTCG CTTTGGTCTG TGTAATGAAA TCTGTCATTT TCACAGAGGA 
AAAAAACTTA CAAAGACAAA ATCCATTGCA AAAGAGCGAG CAACAACGAC 
GAAATTTCGA AATGCCATCG CCACCGACGA CGACTTCTCT CTCGGTGACA 
CAGACCATAA ACGGATCACA CAGCTTCACA ATCAAAGGCT ATTCTTTGGC 
TAAAGGAATC GGGATCGGAA AACACATCGC CAGCGATACT TTCACCGTCG 
GGGGTTATCA ATGGGCTATC TATTTCTATC CTGATGGCAA GAATCCTGAG 
GATAATTCGG CTTATGTCTC CGTTTTCATT GCTTTAGCTA GCGATGGTAC 
CGATGTTAGG GCTCTTTTTG AGCTTTCTTT GCTTGATCAG AGTGGTAAAG 
GGAAGCATAA GGTTCATAGC CACTTCGATC GTGCTCTTGA GAGCGGTCCT 
TATACTCTCA AGTATCGTGG CAGCATGTGG TTCA

AT3G03740.1

Model type: Protein coding
Short Description: BTB-POZ and MATH domain 4
Computational Description: BTB-POZ and MATH domain 4 (BPM4); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 5789 Blast hits to 5682 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 3860; Fungi - 138; Plants - 1466; Viruses - 48; Other Eukaryotes - 277 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G03750.1

Model type: Protein coding
Short Description: SET domain protein 20
Computational Description: SET domain protein 20 (SDG20); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 3 (TAIR:AT1G73100.1); Has 3083 Blast hits to 3057 proteins in 283 species: Archae - 0; Bacteria - 58; Metazoa - 1675; Fungi - 416; Plants - 716; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G03750.2

Model type: Protein coding
Short Description: SET domain protein 20
Computational Description: SET domain protein 20 (SDG20); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (TAIR:AT2G23740.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR