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GT23696

CSHL Arabidopsis genetrap mutant lines

Original: GT23696

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23696

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 287956 [Map]; Strand: w
      • AT3G01810.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -582; Region: promoter
      • AT3G01810.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -613; Region: promoter
      • AT3G01810.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -617; Region: promoter
    Flanking Genome Sequence: GT23696 - 3-prime edge 
    TAAGCTTATC ATTTATATGT ATATAGAAAT TTCCTCTTTA AGAAATATCA 
    CTGAATTATT CTTTGCAACA AGTACAAAAA AAAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 934616 [Map]; Strand: c
      • AT4G02110.1 - [+] show detail - transcription coactivators
        Distance: -470; Region: promoter
    Flanking Genome Sequence: GT23696 - 5-prime edge 
    CCTGATGGTT TTGTTATAAA ATTTCTCGTT AAGAAAAATC GAAAATATAG 
    TAAATGATAT CATGAATTTG TGAATGAATT AGAAAATCTC AATTGCACGT 
    TTGACTCATA TTCTTAAATT AATTGTTTTC TTTTTCGTTA GTAAATATAA 
    TTTAAAATAT CGAGAAACTA AAGCCATGAA TGGTGATATA TACTGCATCC 
    AAAACCGCAC CGCAACAGTG ATATAACAAT ATCAAAATCT CTATATATAC 
    TATCTGAACC GCACCGTATT TCTCCCGTAG CGCAAAACGC AGTCACATGA 
    TTGTGCTTTT CAATTTCTTT TCATCATAAA AAGGCTAGGT TTTTTTTAAC 
    TTTTATCGAC GAATAATCCT CTACAATAGT ATAATAGACT AGTCGCTTGA 
    CGGGGTCATG GTTGATGAGC TTCGAAAACA TATAGAAAAC TTAAGACATC 
    GATTGTGCTA TACATAAATA TTTGGTTGGA ACTACCAATA ACACAAGCGA 
    CCAAGTGACA TACGCACGAG ACAATTTTCA ATCTGAATAA TCATCAAAGT 
    ATTTTAAATT CAAAATTATC CATCGATTTT CTTGAAGTAA TATTTGATCA 
    TGTATATAAT TAAACAGTAA GAGCTTTGAT GCTAACCTAA CCCAACGTAC 
    GTGCGGTAGG CATGATTTGT GTATGAACTA TATACTTCTA AATCCCTTTG 
    TCTTCTCAAC GGCTGGCTTT ATTGGCTCCA CCGTCGAGCC CTTTCGATCT 
    ATTAGGTGAT GTTTTTGATC TCCAAATACA TTTTTGATCG CTTTCTTCTT 
    CA

AT3G01810.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1327 Blast hits to 470 proteins in 132 species: Archae - 2; Bacteria - 131; Metazoa - 139; Fungi - 114; Plants - 114; Viruses - 0; Other Eukaryotes - 827 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01810.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1232 Blast hits to 443 proteins in 120 species: Archae - 2; Bacteria - 119; Metazoa - 136; Fungi - 117; Plants - 114; Viruses - 0; Other Eukaryotes - 744 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01810.3

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2).
Link
InterPro Scan - TAIR

AT4G02110.1

Model type
Protein coding
Short Description
transcription coactivators
Computational Description
transcription coactivators; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (TAIR:AT1G67180.1); Has 6090 Blast hits to 4661 proteins in 497 species: Archae - 12; Bacteria - 945; Metazoa - 2581; Fungi - 684; Plants - 424; Viruses - 13; Other Eukaryotes - 1431 (source: NCBI BLink).
Link
InterPro Scan - TAIR