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GT23697

CSHL Arabidopsis genetrap mutant lines

Original: GT23697

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23697

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 34386 [Map]; Strand: w
      • AT4G00090.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT23697 - 5-prime edge 
    CGGAAGCGGA CATCGGAGGT GCAATCCATG GCCAAAGCGG AGCCTCAGGA 
    TCCGATCCGG AATCCAAAGT CGAATCATCC TGCTCCGAAG AAGAATCATC 
    CCAAATCTCA AGCGTCCGAT AAGGTAAGGT TTTAACTCCA TTTTGTTCCG 
    AGTTTAGGGA TTTCAGATTT GGATATGAGT TGACTTTAAA GCTTTCTCTT 
    CTTCGTTTCT AAATTGCTTG TGGAATGCAG AATCAGAACA AACGGCATCA 
    TCCTTTAGAT TTAAACACGT TGAAAGGCCA CGGTGATGCT GTTACTGGAC 
    TCTGTTTCTC GTCCGATGGA AAGAGCTTGG CCACAGGTTA GAACCTATAA 
    ACACTCCTAC TTAGCTAATC CCTGTCAAGA AGATATTTTT GCTATTTTAC 
    AATTCTGATC ACATTTGTTC CTGTTTTTGA TAGCTTGCGC TGATGGAGTA 
    ATCAGGGTGT TCAAGCTAGA TGATGCATCA AGCAAAAGCT TCAAGTATTT 
    CTTCCTATAT ATAATCTTTC AATAGACAAT GTTAGCCGGT GGGAGTTTAC 
    TTTGCAAGCC CATTTTCATG ATCTAACTGT TTTTTTTGTT TGCTTTCTAA 
    AATTCAGATT TTTAAGGATA AATCTTCCTG CTGGAGGACA TCCAACCGCC 
    GTGGCATTTG CTGACGATGC CCTCATCTAT TGT

AT4G00090.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
Link
InterPro Scan - TAIR