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GT23706

CSHL Arabidopsis genetrap mutant lines

Original: GT23706

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23706

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11186368 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1854; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4175; Region: intergenic
    Flanking Genome Sequence: GT23706 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TACCCATCCT AGTACTACTC 
    TCGCCCAAGC ACGTTTGACT GCGGAGTTCT GATGGGATCC GGTGCATTAG 
    TGCTGGTATG ATCGCATCCG TTAGTATATG CAATGCAATC GTATATATTC 
    ATCTCACTCG ACCAGATCGT ACCGTTACCC GACCGGATCG TATCGGTATA 
    TTCATCTCAC TCGACCAGAT CGTGCCGTTA CCCGACCGGA TCGTATCGGT 
    ATATTCGTCT CACTCGACCA GATCGTGTCC TTACCCTACC GGATCTCTAT 
    CGGTATATTC ATCTCACTCG ACCAGGTCGT AATGTGGCCC CGACGGAGCG 
    TCTCTGGATA TCTTCCTCTG TCCAGCATAT TTCGTCGGAG GGCTGTCTTT 
    GGGCTTTCCG AAAAGGTATC ACCTGCCAAA TTTGGCCTCA GGGTCTAAAA 
    GTTATGGAGT CATAAAGTTT TAACCACACC ACAAAAGGTT AAACATAAGA 
    GAGGGATGCA ACACGAGGAC TTCCCGGGAG GTCACCCATC CTAGTACTAC 
    TCTCGCCCAA GCACGTTTGA CTGCGGAGTT CTGATGGGAT CCGGTGCATT 
    AGTGCTGGTA TGATCGCATC CGTTAGTATA TGCAATGCAA TCGTATATAT 
    T

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR