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GT23732

CSHL Arabidopsis genetrap mutant lines

Original: GT23732

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23732

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1376568 [Map]; Strand: c
      • AT5G04760.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: -1781; Region: intergenic
      • AT5G04770.1 - [+] show detail - cationic amino acid transporter 6
        Distance: -2500; Region: intergenic
    Flanking Genome Sequence: GT23732 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TATTGAATAC ACAGCTTTTT 
    TTTTGGGTGA TATAATAAGG TATCTTCAAA AATTTATATA TGAAATCAAA 
    TCCTAATATC TTGCTTTTAC TGAAACCAAA AATTGTGTTT ACAAAACGGC 
    TCACATATCG AATTGGCACT CAAAAGTCAA ATCACATATT TTGCCACGGA 
    TTTTATATAA CTTCAAATAT ATGGAAAATG GAATTTTTGT ATTTTTCAAT 
    TAAAAAAAAA TACTATAGGG AAAACAAAAA TGGGCAGGTC TGGCACAGGG 
    CGTGTGAAAC GTGGTCGGAT TGAGGCAACC TGAATTTTGC ATCTAATCTA 
    AAATTCAAAT TTGACCATCC CACTCACTGT ATAAACCACT CCACATTATC 
    TTTTTTATTT ATTTCATTAT AACTCTTTTG TGTACCCAAA AATGTGAAAC 
    TTATTGGTGA CCATACAAGT CATAATTTAT TCTTGTCAAA ATTAATTTAT 
    ATATAAATGT ATGTGTATGT GTGTTGTAAA TACAAATATG TGTCAACGTT 
    GCTAACACTT ATCTAATTAT CATTATTGTG AACAAAGAGA GGCTTAAAAG 
    TGTTCAATTG AAGTAAATAT TTAATACTAT TTGTTTGGAT AAGGTAGTGT 
    TAATTCAATG CAGTGCGCGG CCAACCAAAA AATAAAAAGA TCAATTGCAA 
    CGTGTATCCG GTTATGGGTA TGATTGGAAC

AT5G04760.1

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G08520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G04770.1

Model type
Protein coding
Short Description
cationic amino acid transporter 6
Curator Summary
Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. Expressed in sink tissues. Induced during infestation of roots by the plant parasitic root-knot nematode, Meloidogyne incognita. Localized in the plasma membrane.
Computational Description
cationic amino acid transporter 6 (CAT6); CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 7 (TAIR:AT3G10600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR