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GT23738

CSHL Arabidopsis genetrap mutant lines

Original: GT23738

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23738

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 4889594 [Map]; Strand: w
      • AT2G12160.1 - [+] show detail - pseudogene, hypothetical protein
        Distance: -662; Region: promoter
    Flanking Genome Sequence: GT23738 - 3-prime edge 
    GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACTT AAACTGTTAT 
    ATTTGCAGAG ACCTGTGAAA TAACCAGCAC AATCTGATCA TTTGGCACTA 
    TTACATTATT TTCAATAGCC CTAATTATAG GTAGAATCCT GGATAGTATA 
    ATGACAGTCG TAAATACCTA ACAAGGCTTC TCTGTCACAA TTCACAAATA 
    TTCGCACTCT TTAAACGCTT CCCAGGCAAC TCTGCAATGC TCTTTCGATG 
    TCATCTGTGC AAATGCTCAT ACCATTGATC CGGATTCCAT AATAAGAACA 
    GAATGCAACA CAATACTGAT AGACTTTAGT ATTATGAATC TCAATGTAAA 
    TACTGGATTA AAGCCTATCT TTCATAAAGT TCCATAGATT AATAAAGACT 
    CTCAAGGTTT AGGAATTACA AGGAATGAAC AATCAAAACA AATGAAGAAC 
    GAGACTAGAT TCTCGGCATC TCTTCGAATA TATTCTCTCC ATACGATAGT 
    CTCATAGCGA CTAATCCTCC ACTTGATTCA ACATGTCTTT CCCCCAAAGC 
    CACCTCTCCT TATTTATACG CAACAATCCC AAAGCACAAC CTTAACCCTT 
    CATACGTGTG ATTCATGTCA CTCCATCAAC CTCCTTACTT GTCATATCAT 
    CACACGTGTG TGCTACTTTG TTCATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 126659 [Map]; Strand: w
      • AT2G01220.2 - [+] show detail - Nucleotidylyl transferase superfamily protein
        Distance: 193; Region: intergenic
      • AT2G01240.1 - [+] show detail - Reticulon family protein
        Distance: 1781; Region: intergenic
    Flanking Genome Sequence: GT23738 - 5-prime edge 
    ATCACCACAA ATGAATATTA ATGCATTACA TTGTGCTCCA GTTTTTCATT 
    GTTGTTATTG GGTTTTTCCA ATATATGTAG GCCTAAAGTC ATATGGAAAC 
    TAATCTCAAT GGATACTTGG AAAGTATAAA AGTCGGCCCA ATAGTGAAGT 
    GCGTGATTTG TTGAATTACA AAACGCAAGT CGTTTACCCA CTCGCATAAT 
    AAGCGCGTCG ACGCCACCTC CCCGAAATCT GTGGACTAAC CCATGCAGAA 
    ATTTGCCGTT TTTCGTAAAA TTTTAAAAGT GGGCGCGTGT GGGTCGTTTT 
    AGTTTGAGGT GAGGAAAAAA GAAGAAGTAA ACTTGCATTT GATCGGATCT 
    CTTCTCAACT TTTTTTTTGT TGGGATGGTT TTTAATCTTA ACTTTAAATT 
    AAACAAAAAA AAACCATTGG TTAATTAAAA AAACAAAAAC CATTGGTGGG 
    ATGGTCACCT GAAAAAA

AT2G01220.2

Model type
Protein coding
Short Description
Nucleotidylyl transferase superfamily protein
Computational Description
Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biosynthetic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cytidylyltransferase (InterPro:IPR004820); BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT3G27610.1); Has 429 Blast hits to 422 proteins in 57 species: Archae - 6; Bacteria - 30; Metazoa - 0; Fungi - 7; Plants - 76; Viruses - 0; Other Eukaryotes - 310 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01240.1

Model type
Protein coding
Short Description
Reticulon family protein
Computational Description
Reticulon family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: VIRB2-interacting protein 2 (TAIR:AT4G11220.1); Has 375 Blast hits to 375 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 5; Plants - 358; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G12160.1

Model type
Pseudogene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR