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GT23759

CSHL Arabidopsis genetrap mutant lines

Original: GT23759

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23759

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10491614 [Map]; Strand: c
      • AT3G28155.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (T...
        Distance: -5623; Region: intergenic
      • AT3G28157.1 - [+] show detail - transposable element gene
        Distance: -1540; Region: intergenic
    Flanking Genome Sequence: GT23759 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCCCT ATGCATGTAT GTATGTATGC 
    ATGTATGTAT GAATGCATGT ATGTATGAAT GCATGTATGT ATGAATGCAT 
    GACTGTATGA ATGCATGTAT GTAAGTCTCT TTTCTTCAAG CAAGAAAGAC 
    CAGAAACGAT CTATAACATC AAAAAAGTTA ACCTTAAGAA AAAAAACAAG 
    AATCAAACCG GGGACAAAGT GATACAGAAC AAAACAGAGC AGCACAAAAC 
    CATTTTATAT CTTCGATTAC CAGTCACCAC CACGTTCTCC TTTACCATCT 
    CTTTGATAGT ATCCCATCGA TTTATTGTTC TTGAAGCTCA TGAATCAGAA 
    TCCCGTTGAT CTTCCTGTCA AAAACCAAAT CAAACCAAAC CCTAAATTGA 
    TCGACCTCAA GATTACCATA CCAATTGGGA TAAATTTAAA AATAAGCGAA 
    TCAAGTAACA GAGATACACA ATTTGTAAGC CGATCAATCT GACGGATCCC 
    TAAATCCGAG AGATGATTTC TCATGTAGCA ATATTCTAAT CAAGTAACAT 
    AGAAACGCAA TTCGTATAAT CCGATCAGAA TTGCTCCGAC GGAACTGACC 
    TTAGAATCGA TCACCTTGGC CGGACTGAGA GAACACGTAA GAGAACTCGC 
    TCCGGTACTC AAGACAATTT GCGAAAAGGA GAATTTAGGG TTTCAAACGG 
    CCATGAAGTG GAATCAGATC AAAATTACGC ATTATAAATT GTATAATTCA 
    GG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2803584 [Map]; Strand: w
      • AT3G09140.1 - [+] show detail - Protein of unknown function (DUF674)
        Distance: -789; Region: promoter
      • AT3G09140.2 - [+] show detail - Protein of unknown function (DUF674)
        Distance: -789; Region: promoter
      • AT3G09150.2 - [+] show detail - phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin sy...
        Distance: 0; Region: exon1 (5UTR)
      • AT3G09150.1 - [+] show detail - phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin sy...
        Distance: -13; Region: promoter
      • AT3G09150.3 - [+] show detail - phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin sy...
        Distance: -26; Region: promoter
    Flanking Genome Sequence: GT23759 - 5-prime edge 
    AAGCCAAAAA AACCTAAGAA CGAAGTCAAT ATTTTCCCTT TAAAAAAAAA 
    AAAGGGAACC CTTTTTTTTT CAAAAAATTT TTTCCCCCCT TTTCGGGTTT 
    TCCCCCTTTT TGAAAGTTCC CCCCCTTTTC CCGGGTGTTT TTTTTGAAAA 
    TTTTTAAAAA ATTTTGTCCC CCCCAAAAAA AAGTTGGGTC ATGATTCAAG 
    GCAGCAAAGC CAGCTGTTCT AATCTCTGGA AGACCTAGAA AAATCAATTT 
    CCAGTTGATA AGGAGAAATA AAAGATTCCT ACTAAGACTC TCTGCTGTGT 
    CG

AT3G09140.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF674)
Computational Description
Protein of unknown function (DUF674); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF674) (TAIR:AT5G01150.1); Has 424 Blast hits to 257 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 422; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09140.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF674)
Computational Description
Protein of unknown function (DUF674); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF674) (TAIR:AT5G01150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09150.1

Model type
Protein coding
Short Description
phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Curator Summary
Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.
Computational Description
ELONGATED HYPOCOTYL 2 (HY2); CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 403 Blast hits to 403 proteins in 61 species: Archae - 0; Bacteria - 184; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09150.2

Model type
Protein coding
Short Description
phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Curator Summary
Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.
Computational Description
ELONGATED HYPOCOTYL 2 (HY2); CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 407 Blast hits to 407 proteins in 62 species: Archae - 0; Bacteria - 187; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09150.3

Model type
Protein coding
Short Description
phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Curator Summary
Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.
Computational Description
ELONGATED HYPOCOTYL 2 (HY2); CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G28155.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G35630.1); Has 19 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G28157.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR