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GT23760

CSHL Arabidopsis genetrap mutant lines

Original: GT23760

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23760

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3499519 [Map]; Strand: c
      • AT3G11165.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -429; Region: promoter
      • AT3G11170.1 - [+] show detail - fatty acid desaturase 7
        Distance: -282; Region: promoter
    Flanking Genome Sequence: GT23760 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCCCT ATATATAGTC ACTAAAATAA 
    TGTGTATAAA TTTTGCTACC GTCATTTAAA AGTTAGTGTC ATGAAACATA 
    TGCCTCATTA TATTTTATTA TTTTCGTTCA CTTTATTTCA AAGGCTTAAA 
    ACTATATGAC ATCATAACCA AAACAAGAAT TAAAACGAGA TCAATCAAAT 
    CCGTGTTGAA ACCTCAACTT GTGTCTAAAT TGACCGTCAC AAAAAAAAAT 
    CTCACATCAC ACCATCACTA ATAAATTTCC TTCTCCTTTC AAGTTGTAGC 
    TAACTTATAT AAGACATAAG CGTGTGAACC AGAGACAGAG ATAGAAATTG 
    AGAGACGATA AGCAAAGTAG AAAACACAAG TTTCTCTCAC ACACATTATC 
    TCTTTCTCTA TTACCACCAC TCATTCATCT CACTCGACAA AAGCGTAGCG 
    TTACCCGACC GGATCGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3499437 [Map]; Strand: c
      • AT3G11165.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -347; Region: promoter
      • AT3G11170.1 - [+] show detail - fatty acid desaturase 7
        Distance: -364; Region: promoter
    Flanking Genome Sequence: GT23760 - 5-prime edge 
    CTGACTATAT AAGATTGTTA GACAAAACAA GAGGAGTTTG GTGAAGAAAC 
    CTATTTCAGA ATTTGAGTCA ATTACGTTTC AATGTTTCAC ACCCTATACC 
    TATTGTTTCA ATAGGGACAA ACCAAATCTC ATGCTACTAG TCAAGTTACA 
    TGGACGGTGA ACATAAAAAT TGAACCAAGT GGAAATTGAA ATTAAACATG 
    CCAAACCCAA CTAGTTGGAC CAAATTAGTT GGTCAGCCTG AAATAAATTA 
    GCCCAAGAGA TTTGTACAAA ACGAACAATA ATGTCGCTCA TTTGGGCTAG 
    GGCCCAATAG TATAAGTCCA TTAAACTACA GAACTCTCAA AAGATCCGAC 
    CTTTTTTATT CTCACAAATC GCGTATAGAC AAAGAAGAAG AAGAGCGAAC 
    GAACCCTAAT ATCCGATCAT GGCACCGAAC AACAATCTGA GGTCCTTAAT 
    CGCGCTGGTA AATTAAAGAT TCCGTTATGA TTATCCTTTT TTTTTTCTTT 
    TCAACAGCCT TTTTTTTGGT GGTGGTTGGT TACCTTCCTT GGGGCAACCT 
    TTGAAAAAAA ATAAAACTT

AT3G11165.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11170.1

Model type
Protein coding
Short Description
fatty acid desaturase 7
Curator Summary
Chloroplastic enzyme responsible for the synthesis of 16:3 and 18:3 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene expression is induced by wounding in shoot and root. The wound-response in shoot is independent of jasmonic acid mediated pathway whereas the root response is mediated by jasmonic acid.
Computational Description
fatty acid desaturase 7 (FAD7); FUNCTIONS IN: omega-3 fatty acid desaturase activity; INVOLVED IN: response to cold, response to wounding, fatty acid biosynthetic process, jasmonic acid mediated signaling pathway; LOCATED IN: plastid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3474 (InterPro:IPR021863), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: fatty acid desaturase 8 (TAIR:AT5G05580.1); Has 2938 Blast hits to 2935 proteins in 698 species: Archae - 0; Bacteria - 1234; Metazoa - 17; Fungi - 265; Plants - 926; Viruses - 0; Other Eukaryotes - 496 (source: NCBI BLink).
Link
InterPro Scan - TAIR