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GT23761

CSHL Arabidopsis genetrap mutant lines

Original: GT23761

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23761

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 274498 [Map]; Strand: w
      • AT2G01610.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT23761 - 3-prime edge 
    TACCGACCGT TACCGACCGT TTTCATCCAC TGCGGCTTTT CTCTCCTAAC 
    TCTCACGCTC TGCCGCTAAA TACTCCGGTG ATGGCCACCA AACAGCTTCC 
    GCCGTAATCC GAGACTGCGT TTCGAACGTC GAAGACGCGG TGGACGAGAT 
    GAGAGGATCT CTCCGTCAAC TACGCGACAT GAACGGCAGA GGAGGCGGCA 
    CGGCAGCTCG GAGGTCGGTA GAAACGTTTA GGTTCCAGAT GAGTAACGTG 
    CAGACGTGGA TGAGTGCAGC ATTGACGGAT GAGGACACGT GTACGGATGG 
    ATTTGAAGAT ATGGACGAAG GAGGATTGAT TAAGACGACC GTTTGTGATC 
    GTCTCGAGGA AGTGAAGAGG CTAACGAGTA ATGCTCTTGC CCTTGTCAAC 
    ACTTACGCCA ACAATGGAGC TCCATGACCA TGAGACCATG AGACCATGAG 
    GAGTTTTAAC TTTGATTTAA GTGTCTCTTT ATATAATTTA TTACATTGTG 
    GGGTTTAAGT TAAAGTTATG TGTCGATTTC ATCATGTTTT ACATTTGTTT 
    TTGTATCATC CGAGTTTATT ATGTTTAAAG GGTTCAGAGA GATGTTATAT 
    CTTTGATTTA CTAATTAAAC TGCACGATGA TATTAATATA TATAGTAGAT 
    ATATATGTCT CAACAATCAC A

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18556730 [Map]; Strand: c
      • AT4G40030.1 - [+] show detail - Histone superfamily protein
        Distance: 0; Region: intron1 (5UTR)
      • AT4G40030.2 - [+] show detail - Histone superfamily protein
        Distance: 0; Region: intron1 (CDS)
      • AT4G40030.3 - [+] show detail - Histone superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT23761 - 5-prime edge 
    ATCTGATTTT ACGACAATAG AGTTTCGGGT TTTGTCCCAT TCCAGTTTGA 
    AAATAAAGGT CCGTCTTTTA AGTTTGCTGG ATCGATAAAC CTGTGAAGAT 
    TGAGTCTAGT CGATTTATTG GATGATCCAT TCTTCATCGT TTTTTTCTTG 
    CTTCGAAGTT CTGTATAACC AGATTTGTCT GTGTGCGATT GTCATTACCT 
    AGCCGTGTAT CGAGAACTAG GGTTTTCGAG TCAATTTTGC CCCTTTTGGT 
    TATATCTGGT TCGATAACGA TTCATCTGGA TTAGGGTTTT AAGTGGTGAC 
    GTTTAGTATT CCAATTTCTT CAAAATTTAG TTATGGATAA TGAAAATCCC 
    CAATTGACTG TTCAGTTTCT TGTTATCTGC GCGGATG

AT2G01610.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily protein
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G14890.1); Has 850 Blast hits to 843 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 850; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G40030.1

Model type
Protein coding
Short Description
Histone superfamily protein
Computational Description
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10980.1); Has 14600 Blast hits to 14592 proteins in 7243 species: Archae - 0; Bacteria - 0; Metazoa - 10603; Fungi - 2037; Plants - 1258; Viruses - 0; Other Eukaryotes - 702 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G40030.2

Model type
Protein coding
Short Description
Histone superfamily protein
Computational Description
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10980.1); Has 14638 Blast hits to 14630 proteins in 7251 species: Archae - 0; Bacteria - 0; Metazoa - 10605; Fungi - 2037; Plants - 1272; Viruses - 0; Other Eukaryotes - 724 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G40030.3

Model type
Protein coding
Short Description
Histone superfamily protein
Computational Description
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10980.1); Has 14600 Blast hits to 14592 proteins in 7243 species: Archae - 0; Bacteria - 0; Metazoa - 10603; Fungi - 2037; Plants - 1258; Viruses - 0; Other Eukaryotes - 702 (source: NCBI BLink).
Link
InterPro Scan - TAIR